Variant report

Variant	rs57242312
Chromosome Location	chr20:24358450-24358451
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs56698917	1.00[AMR][1000 genomes]
rs58411424	1.00[AMR][1000 genomes]
rs58816199	1.00[AMR][1000 genomes]
rs60071381	1.00[AMR][1000 genomes]
rs6036757	1.00[AMR][1000 genomes]
rs6036761	1.00[AMR][1000 genomes]
rs6036764	1.00[AMR][1000 genomes]
rs6036765	1.00[AMR][1000 genomes]
rs6036795	1.00[AMR][1000 genomes]
rs6036799	1.00[AMR][1000 genomes]
rs6049646	1.00[AMR][1000 genomes]
rs6049649	1.00[AMR][1000 genomes]
rs6049650	1.00[AMR][1000 genomes]
rs6049658	1.00[AMR][1000 genomes]
rs6049661	1.00[AMR][1000 genomes]
rs6049664	1.00[AMR][1000 genomes]
rs6049684	1.00[AMR][1000 genomes]
rs6049685	1.00[AMR][1000 genomes]
rs6106890	1.00[AMR][1000 genomes]
rs6114680	1.00[AMR][1000 genomes]
rs6114737	1.00[AMR][1000 genomes]
rs6114742	1.00[AMR][1000 genomes]
rs61327850	1.00[AMR][1000 genomes]
rs61331067	1.00[AMR][1000 genomes]
rs61466179	1.00[AMR][1000 genomes]
rs7267437	1.00[AMR][1000 genomes]
rs73334429	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73334458	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73334471	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73334489	1.00[AMR][1000 genomes]
rs73334499	1.00[AMR][1000 genomes]
rs73336247	1.00[AMR][1000 genomes]
rs73338050	1.00[AMR][1000 genomes]
rs73339909	1.00[AMR][1000 genomes]
rs73339961	1.00[AMR][1000 genomes]
rs73339963	1.00[AMR][1000 genomes]
rs73339986	1.00[AMR][1000 genomes]
rs73341661	1.00[AMR][1000 genomes]
rs73341667	1.00[AMR][1000 genomes]
rs73341672	1.00[AMR][1000 genomes]
rs73341695	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv833946	chr20:24320375-24490702	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24349200-24360000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr20:24354000-24359400	Weak transcription	Fetal Muscle Leg	muscle
3	chr20:24354800-24359400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr20:24356800-24360000	Weak transcription	Fetal Heart	heart
5	chr20:24357400-24360000	Weak transcription	Fetal Stomach	stomach
6	chr20:24357400-24360000	Weak transcription	NHLF	lung
7	chr20:24357600-24360400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr20:24357800-24359400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr20:24357800-24359400	Weak transcription	Fetal Lung	lung
10	chr20:24357800-24359600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr20:24357800-24359800	Weak transcription	Colon Smooth Muscle	Colon
12	chr20:24357800-24359800	Weak transcription	Rectal Smooth Muscle	rectum
13	chr20:24357800-24360000	Weak transcription	Stomach Smooth Muscle	stomach
14	chr20:24357800-24362800	Weak transcription	Primary hematopoietic stem cells	blood
15	chr20:24358000-24359400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr20:24358000-24359400	Weak transcription	NH-A	brain
17	chr20:24358000-24359600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr20:24358000-24359800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr20:24358000-24362400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr20:24358000-24362800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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