Variant report

Variant	rs572447
Chromosome Location	chr1:197285416-197285417
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1337169	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1415214	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1615444	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1764622	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1764623	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1764624	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1764625	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1764786	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1764787	0.85[EUR][1000 genomes]
rs1764788	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1764791	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1764792	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2786108	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2786110	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2786111	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2786112	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2786113	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2786115	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2821127	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2821131	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs482526	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs550098	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs554009	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs570845	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs580067	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs643025	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs658409	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs664767	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs675699	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528460	chr1:196542567-197446702	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197279400-197290000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr1:197284400-197290200	Weak transcription	Brain Angular Gyrus	brain
3	chr1:197284400-197290200	Weak transcription	Brain Germinal Matrix	brain
4	chr1:197284400-197296800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr1:197284600-197289200	Weak transcription	Brain Anterior Caudate	brain
6	chr1:197284600-197289200	Weak transcription	Brain Substantia Nigra	brain
7	chr1:197284600-197289600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:197284600-197290000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr1:197284800-197289600	Weak transcription	Brain Hippocampus Middle	brain
10	chr1:197284800-197289800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links