Variant report

Variant	rs572892212
Chromosome Location	chr9:110502201-110502202
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:110498957..110503711-chr9:110512687..110515100,7	MCF-7	breast:
2	chr9:110500818..110503086-chr9:110517383..110519685,3	MCF-7	breast:
3	chr9:110500719..110502247-chr9:110502621..110504318,2	MCF-7	breast:
4	chr9:110501617..110503212-chr9:110597427..110600005,2	MCF-7	breast:
5	chr9:110249403..110253964-chr9:110500193..110503915,6	MCF-7	breast:
6	chr9:110501530..110503176-chr9:110565296..110567173,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136826	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427850	chr9:110456613-110632324	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv428221	chr9:110456613-110632324	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv525064	chr9:110501437-110504358	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110495800-110504200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr9:110496000-110503200	Enhancers	Fetal Lung	lung
3	chr9:110496000-110503600	Enhancers	Ovary	ovary
4	chr9:110496000-110510800	Weak transcription	Aorta	Aorta
5	chr9:110496200-110502400	Weak transcription	Gastric	stomach
6	chr9:110496200-110502400	Enhancers	Osteobl	bone
7	chr9:110497000-110503000	Enhancers	NHDF-Ad	bronchial
8	chr9:110497000-110503000	Enhancers	NHLF	lung
9	chr9:110497200-110506600	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr9:110497200-110506800	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr9:110497400-110503800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr9:110497400-110510800	Weak transcription	Psoas Muscle	Psoas
13	chr9:110498200-110503000	Enhancers	Fetal Stomach	stomach
14	chr9:110499400-110502800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr9:110499400-110504800	Enhancers	Fetal Muscle Trunk	muscle
16	chr9:110499600-110503000	Enhancers	Sigmoid Colon	Sigmoid Colon
17	chr9:110499600-110503400	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr9:110499800-110502600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr9:110499800-110503400	Enhancers	HMEC	breast
20	chr9:110499800-110505200	Enhancers	Adipose Nuclei	Adipose
21	chr9:110500000-110504000	Enhancers	Stomach Mucosa	stomach
22	chr9:110500000-110504200	Enhancers	Fetal Muscle Leg	muscle
23	chr9:110500000-110505000	Weak transcription	Spleen	Spleen
24	chr9:110500200-110502400	Enhancers	HSMM	muscle
25	chr9:110500200-110502600	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr9:110500200-110503000	Enhancers	Right Ventricle	heart
27	chr9:110500200-110503000	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr9:110500400-110503000	Enhancers	HSMMtube	muscle
29	chr9:110500600-110504000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr9:110500800-110502400	Enhancers	Lung	lung
31	chr9:110500800-110502400	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr9:110500800-110503000	Enhancers	Esophagus	oesophagus
33	chr9:110500800-110503000	Enhancers	Left Ventricle	heart
34	chr9:110500800-110503000	Enhancers	Right Atrium	heart
35	chr9:110500800-110511600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr9:110501000-110503000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr9:110501000-110507000	Weak transcription	GM12878-XiMat	blood
38	chr9:110501200-110502400	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr9:110501200-110502400	Weak transcription	Placenta	Placenta
40	chr9:110501200-110502600	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr9:110501200-110503000	Enhancers	Muscle Satellite Cultured Cells	--
42	chr9:110501200-110510600	Weak transcription	Brain Anterior Caudate	brain
43	chr9:110501400-110502400	Weak transcription	Colonic Mucosa	Colon
44	chr9:110501400-110503000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr9:110501400-110504000	Enhancers	Hela-S3	cervix
46	chr9:110501400-110504200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr9:110501800-110502600	Enhancers	Fetal Brain Male	brain
48	chr9:110501800-110503000	Enhancers	Brain Germinal Matrix	brain
49	chr9:110501800-110503200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr9:110501800-110503200	Enhancers	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links