Variant report

Variant	rs57291879
Chromosome Location	chr11:72041441-72041442
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:72036005..72039181-chr11:72039282..72042526,3	K562	blood:
2	chr11:72037535..72041965-chr11:72042144..72047706,5	K562	blood:
3	chr11:72037487..72041965-chr11:72042972..72047706,6	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs12416741	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1783632	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1784257	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2508201	0.87[ASN][1000 genomes]
rs2508204	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2508861	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2508865	0.87[ASN][1000 genomes]
rs2508866	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs36049191	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs472837	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs487288	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs506041	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55723921	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56229279	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs56333926	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57276029	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57464210	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57614093	0.87[ASN][1000 genomes]
rs57669200	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs58306819	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58489620	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58753751	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs590732	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs59427981	0.87[ASN][1000 genomes]
rs59509230	0.84[ASN][1000 genomes]
rs59612321	0.87[ASN][1000 genomes]
rs59755180	0.82[EUR][1000 genomes]
rs59980097	0.84[ASN][1000 genomes]
rs60024067	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs60849224	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61563240	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs650834	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7108974	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7116854	0.87[ASN][1000 genomes]
rs7130652	0.87[ASN][1000 genomes]
rs73528886	0.87[ASN][1000 genomes]
rs73528892	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73528897	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7952074	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832206	chr11:72006573-72176017	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv1794740	chr11:72021720-72332931	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72002800-72044600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr11:72003200-72041800	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr11:72003200-72041800	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr11:72008400-72044600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr11:72012800-72070600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr11:72014600-72045000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr11:72024600-72042200	Weak transcription	Small Intestine	intestine
8	chr11:72025600-72054000	Weak transcription	GM12878-XiMat	blood
9	chr11:72026200-72044600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr11:72026600-72067400	Weak transcription	Fetal Intestine Large	intestine
11	chr11:72026800-72044200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:72027000-72044800	Weak transcription	Colonic Mucosa	Colon
13	chr11:72027200-72045000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr11:72027600-72060600	Weak transcription	Brain Hippocampus Middle	brain
15	chr11:72027800-72044200	Weak transcription	Thymus	Thymus
16	chr11:72028000-72045200	Weak transcription	Brain Cingulate Gyrus	brain
17	chr11:72028200-72042800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr11:72028200-72044600	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr11:72028200-72044800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr11:72028400-72043200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr11:72028400-72060800	Weak transcription	Gastric	stomach
22	chr11:72028600-72047000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr11:72029000-72041600	Weak transcription	Brain Substantia Nigra	brain
24	chr11:72030600-72060200	Weak transcription	Adipose Nuclei	Adipose
25	chr11:72032800-72054600	Weak transcription	Brain Anterior Caudate	brain
26	chr11:72033000-72075600	Weak transcription	A549	lung
27	chr11:72033200-72063800	Weak transcription	Aorta	Aorta
28	chr11:72034200-72047600	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr11:72037600-72041800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr11:72037600-72041800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr11:72037800-72041600	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr11:72037800-72041800	Strong transcription	Dnd41	blood
33	chr11:72037800-72042000	Strong transcription	Primary T cells from cord blood	blood
34	chr11:72038200-72071200	Weak transcription	HMEC	breast
35	chr11:72038400-72042000	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr11:72038400-72049800	Weak transcription	NHDF-Ad	bronchial
37	chr11:72038400-72053600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr11:72038400-72076600	Weak transcription	Liver	Liver
39	chr11:72038800-72044400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr11:72038800-72060600	Weak transcription	Esophagus	oesophagus
41	chr11:72039200-72041800	Enhancers	Left Ventricle	heart
42	chr11:72039400-72044600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr11:72039400-72060400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr11:72039600-72049400	Weak transcription	HSMMtube	muscle
45	chr11:72039800-72041800	Enhancers	Psoas Muscle	Psoas
46	chr11:72039800-72041800	Enhancers	Right Ventricle	heart
47	chr11:72039800-72042000	Strong transcription	K562	blood
48	chr11:72039800-72043000	Weak transcription	Fetal Thymus	thymus
49	chr11:72039800-72043200	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr11:72039800-72044400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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