Variant report

Variant	rs573011087
Chromosome Location	chr5:146066261-146066262
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015804	chr5:146066000-146788233	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv537915	chr5:146066000-146788233	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146047800-146069000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr5:146052200-146069400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr5:146052200-146078400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr5:146055200-146070000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr5:146060400-146078200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:146061600-146067000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr5:146061600-146069200	Weak transcription	Aorta	Aorta
8	chr5:146062000-146077000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr5:146064200-146068000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr5:146064200-146070200	Weak transcription	Brain Germinal Matrix	brain
11	chr5:146064200-146071000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr5:146064200-146078200	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr5:146064800-146067600	Weak transcription	Brain Anterior Caudate	brain
14	chr5:146064800-146075000	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr5:146065000-146066400	Strong transcription	Cortex derived primary cultured neurospheres	brain
16	chr5:146065000-146073400	Weak transcription	Fetal Brain Female	brain
17	chr5:146065200-146068000	Weak transcription	Brain Angular Gyrus	brain
18	chr5:146065400-146067800	Weak transcription	Brain Substantia Nigra	brain
19	chr5:146065800-146068000	Weak transcription	Brain Hippocampus Middle	brain
20	chr5:146066000-146067000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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