Variant report

Variant	rs57313668
Chromosome Location	chr1:71342541-71342542
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11804440	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11805293	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11807666	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11808587	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11808606	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11809115	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12566076	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13306022	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17131478	0.90[ASN][1000 genomes]
rs17131479	0.90[ASN][1000 genomes]
rs17131486	0.90[ASN][1000 genomes]
rs34115027	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34247575	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34580971	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35284022	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35327754	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35946140	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35952145	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs41287914	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58239962	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60466683	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60994441	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6667891	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6669396	0.86[ASN][1000 genomes]
rs6683228	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7541092	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845198	chr1:71274759-71514969	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830148	chr1:71310366-71483932	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71330800-71343200	Weak transcription	K562	blood
2	chr1:71341400-71347800	Weak transcription	Aorta	Aorta
3	chr1:71341800-71345800	Weak transcription	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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