Variant report

Variant	rs573269599
Chromosome Location	chr7:6835721-6835722
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015277	chr7:6705439-7303195	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv887441	chr7:6744957-6919214	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv966754	chr7:6750289-6838266	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv887444	chr7:6753286-6855510	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv887445	chr7:6758018-6843722	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv887446	chr7:6758018-6870635	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv887447	chr7:6764583-6843722	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv887448	chr7:6764583-6855510	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv887449	chr7:6764583-6870635	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	esv2757207	chr7:6764583-6977214	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
11	esv2759504	chr7:6764583-6977214	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
12	nsv887450	chr7:6779270-6919214	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
13	nsv887451	chr7:6779270-6985071	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
14	esv33385	chr7:6784757-6840337	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv887452	chr7:6791749-6919214	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
16	nsv887453	chr7:6803267-6919214	Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
17	nsv887454	chr7:6805437-6919214	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
18	nsv887455	chr7:6820508-6960802	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
19	nsv887456	chr7:6820508-6985071	Weak transcription Bivalent Enhancer Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
20	nsv887457	chr7:6820508-7163442	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
21	nsv887458	chr7:6832265-6948647	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
22	nsv887459	chr7:6832265-6950761	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
23	nsv887460	chr7:6832265-6952350	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
24	nsv887461	chr7:6832265-7163442	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
25	esv2762647	chr7:6833877-6885538	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:6824000-6851600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr7:6831400-6848800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr7:6831400-6849000	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr7:6831400-6850000	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr7:6831400-6850600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:6831400-6856600	Weak transcription	Thymus	Thymus
7	chr7:6832000-6849000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr7:6832000-6849000	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr7:6832000-6850200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr7:6832000-6850600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr7:6832000-6851800	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr7:6832000-6851800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr7:6832000-6852800	Weak transcription	Brain Germinal Matrix	brain
14	chr7:6832000-6853000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr7:6832000-6855000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr7:6832000-6856000	Weak transcription	Fetal Brain Female	brain
17	chr7:6832000-6856400	Weak transcription	Fetal Intestine Large	intestine
18	chr7:6832000-6864600	Weak transcription	Primary T cells from cord blood	blood
19	chr7:6832000-6864800	Weak transcription	Fetal Thymus	thymus
20	chr7:6832200-6849000	Weak transcription	Liver	Liver
21	chr7:6832200-6849800	Weak transcription	Fetal Muscle Trunk	muscle
22	chr7:6832200-6852600	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr7:6832200-6853000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr7:6832200-6860800	Weak transcription	Brain Anterior Caudate	brain
25	chr7:6832400-6850600	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr7:6832400-6850600	Weak transcription	Fetal Intestine Small	intestine
27	chr7:6832400-6856600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr7:6832400-6864600	Weak transcription	Fetal Lung	lung
29	chr7:6832600-6851800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr7:6832600-6858000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr7:6832600-6861000	Weak transcription	HUVEC	blood vessel
32	chr7:6832600-6864600	Weak transcription	NHLF	lung
33	chr7:6832800-6849400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr7:6832800-6853000	Weak transcription	Placenta	Placenta
35	chr7:6833000-6849800	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr7:6833000-6865200	Weak transcription	Left Ventricle	heart
37	chr7:6833000-6865200	Weak transcription	Ovary	ovary
38	chr7:6833200-6865200	Weak transcription	Pancreas	Pancrea
39	chr7:6833400-6849600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr7:6833400-6851000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr7:6833600-6850600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr7:6833600-6864600	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr7:6833600-6865200	Weak transcription	Duodenum Mucosa	Duodenum
44	chr7:6833800-6851800	Weak transcription	Spleen	Spleen
45	chr7:6833800-6853000	Weak transcription	Fetal Muscle Leg	muscle
46	chr7:6833800-6853000	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr7:6834000-6843400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr7:6834000-6849600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr7:6834000-6849600	Weak transcription	Fetal Stomach	stomach
50	chr7:6834000-6850000	Weak transcription	Adipose Nuclei	Adipose

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