Variant report

Variant	rs57330425
Chromosome Location	chr20:24515475-24515476
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10222011	1.00[AMR][1000 genomes]
rs6106896	1.00[AMR][1000 genomes]
rs6106897	1.00[AMR][1000 genomes]
rs6114756	1.00[AMR][1000 genomes]
rs6114761	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6114762	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6114824	1.00[AMR][1000 genomes]
rs73341698	1.00[AMR][1000 genomes]
rs73901851	1.00[AMR][1000 genomes]
rs73902581	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24504000-24525800	Weak transcription	Aorta	Aorta
2	chr20:24508200-24523800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr20:24510800-24518000	Weak transcription	Gastric	stomach
4	chr20:24510800-24525200	Weak transcription	Left Ventricle	heart
5	chr20:24511400-24515800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr20:24511400-24516200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr20:24513200-24516600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr20:24513600-24515600	Weak transcription	Brain Anterior Caudate	brain
9	chr20:24514800-24525800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr20:24515000-24516800	Enhancers	Brain Hippocampus Middle	brain
11	chr20:24515000-24517200	Enhancers	Brain Substantia Nigra	brain
12	chr20:24515200-24517200	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr20:24515400-24517400	Enhancers	Brain Angular Gyrus	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links