Variant report

Variant	rs57334336
Chromosome Location	chr3:143078023-143078024
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:143073351..143075780-chr3:143076251..143080121,5	K562	blood:
2	chr3:143076644..143082089-chr3:143083976..143087336,5	K562	blood:
3	chr3:143073365..143075780-chr3:143077862..143079884,2	K562	blood:
4	chr3:143064715..143066302-chr3:143076677..143078455,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10513199	1.00[AMR][1000 genomes]
rs11915763	0.84[AFR][1000 genomes]
rs11925776	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16853508	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16853511	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16853527	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16853529	1.00[AMR][1000 genomes]
rs34043464	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57687610	1.00[AMR][1000 genomes]
rs58810476	1.00[AMR][1000 genomes]
rs72992119	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72992127	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72992135	0.81[AFR][1000 genomes]
rs72992177	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72992193	1.00[AMR][1000 genomes]
rs72992195	1.00[AMR][1000 genomes]
rs72992201	1.00[AMR][1000 genomes]
rs7610768	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv2757894	chr3:142992697-143285979	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2759184	chr3:142992697-143285979	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv877564	chr3:143059952-143116883	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143068200-143078400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr3:143068200-143091800	Weak transcription	Lung	lung
3	chr3:143068800-143082000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr3:143069000-143080800	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr3:143069000-143081600	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr3:143069200-143080600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr3:143069800-143081200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr3:143070200-143088600	Weak transcription	Aorta	Aorta
9	chr3:143071200-143081600	Weak transcription	Fetal Lung	lung
10	chr3:143071600-143102400	Weak transcription	Esophagus	oesophagus
11	chr3:143072000-143099400	Weak transcription	Ovary	ovary
12	chr3:143072200-143081200	Weak transcription	Adipose Nuclei	Adipose
13	chr3:143072400-143081200	Weak transcription	Fetal Thymus	thymus
14	chr3:143072400-143082200	Weak transcription	Primary B cells from cord blood	blood
15	chr3:143072400-143083000	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr3:143072400-143083000	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr3:143073400-143089600	Weak transcription	Psoas Muscle	Psoas
18	chr3:143076400-143078400	Enhancers	Brain Anterior Caudate	brain
19	chr3:143076400-143079000	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr3:143076400-143079000	Enhancers	Stomach Mucosa	stomach
21	chr3:143076600-143078400	Enhancers	HUVEC	blood vessel
22	chr3:143077000-143078400	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr3:143077000-143078400	Enhancers	Brain Substantia Nigra	brain
24	chr3:143077000-143079400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr3:143077000-143080200	Enhancers	Dnd41	blood
26	chr3:143077200-143078400	Enhancers	Brain Cingulate Gyrus	brain
27	chr3:143077200-143078400	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr3:143077400-143104800	Weak transcription	Brain Hippocampus Middle	brain
29	chr3:143077600-143078600	Enhancers	Gastric	stomach
30	chr3:143077800-143079400	Enhancers	Pancreas	Pancrea
31	chr3:143078000-143078200	Enhancers	Duodenum Smooth Muscle	Duodenum

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