Variant report

Variant	rs573405823
Chromosome Location	chr15:51897688-51897689
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471243	chr15:51345485-52018096	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv904219	chr15:51851999-51977159	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
3	nsv457139	chr15:51854718-51977159	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
4	nsv569407	chr15:51854718-51977159	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
5	nsv569408	chr15:51867172-51946100	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	n/a
6	esv3311227	chr15:51897590-51898150	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	esv3336333	chr15:51897597-51898165	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	esv3311231	chr15:51897639-51898114	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
9	esv3311228	chr15:51897641-51898079	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
10	esv3399634	chr15:51897646-51898093	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
11	esv3494379	chr15:51897648-51898173	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
12	esv3494378	chr15:51897654-51898166	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
13	esv3494380	chr15:51897654-51898166	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
14	esv3699	chr15:51897658-51898316	Weak transcription Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
15	esv3311229	chr15:51897661-51898106	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:51889400-51909400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:51890000-51902000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr15:51891800-51903800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr15:51892600-51913000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr15:51893000-51911000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr15:51893800-51904000	Weak transcription	Fetal Stomach	stomach
7	chr15:51894000-51906000	Weak transcription	Dnd41	blood
8	chr15:51894800-51901600	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr15:51895000-51911600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr15:51895200-51913000	Weak transcription	HMEC	breast
11	chr15:51895400-51898000	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr15:51896000-51904000	Weak transcription	Lung	lung
13	chr15:51897200-51910800	Weak transcription	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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