Variant report

Variant	rs57356511
Chromosome Location	chr4:143713304-143713305
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11100757	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11100758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11100759	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12499329	1.00[ASN][1000 genomes]
rs12500163	1.00[EUR][1000 genomes]
rs12502865	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12502867	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12504681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12507170	1.00[ASN][1000 genomes]
rs12507570	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12507620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12508023	1.00[EUR][1000 genomes]
rs12509337	1.00[ASN][1000 genomes]
rs12509521	1.00[ASN][1000 genomes]
rs12510307	1.00[ASN][1000 genomes]
rs17016749	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17016755	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17016776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28633136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28753896	0.83[AFR][1000 genomes]
rs55657725	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55862660	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55942956	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56207111	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56254574	0.97[AFR][1000 genomes]
rs57908294	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6812076	0.97[AFR][1000 genomes]
rs6831728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7689139	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv595606	chr4:143631691-143729595	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv880174	chr4:143639498-143848024	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143698400-143719000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr4:143698800-143738600	Weak transcription	Aorta	Aorta
3	chr4:143699000-143714600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:143706400-143714600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:143709200-143732200	Weak transcription	Left Ventricle	heart
6	chr4:143711200-143715800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr4:143711200-143716000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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