Variant report

Variant	rs57360299
Chromosome Location	chr2:63718333-63718334
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs13431266	1.00[EUR][1000 genomes]
rs1455265	1.00[EUR][1000 genomes]
rs17027850	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17027873	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17027894	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17027897	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17027899	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17027901	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17027902	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17027903	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17027904	0.92[AFR][1000 genomes]
rs17027906	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17027922	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17027970	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17028098	1.00[EUR][1000 genomes]
rs56778186	1.00[EUR][1000 genomes]
rs57272995	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57518057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57702773	1.00[EUR][1000 genomes]
rs57840658	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58051386	1.00[EUR][1000 genomes]
rs58523998	1.00[EUR][1000 genomes]
rs58695205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58718173	1.00[EUR][1000 genomes]
rs59718895	1.00[EUR][1000 genomes]
rs59969247	1.00[EUR][1000 genomes]
rs59973565	1.00[EUR][1000 genomes]
rs60215951	1.00[EUR][1000 genomes]
rs60413056	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60600949	1.00[EUR][1000 genomes]
rs60935023	1.00[EUR][1000 genomes]
rs61165969	1.00[EUR][1000 genomes]
rs61271282	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3417336	chr2:62957866-63749654	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv1800788	chr2:63473443-63900292	ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63666600-63726800	Weak transcription	Gastric	stomach
2	chr2:63688600-63727800	Weak transcription	Primary B cells from cord blood	blood
3	chr2:63688800-63723000	Weak transcription	Liver	Liver
4	chr2:63690600-63733000	Weak transcription	Dnd41	blood
5	chr2:63691000-63724400	Weak transcription	Primary B cells from peripheral blood	blood
6	chr2:63691400-63728000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr2:63691600-63719800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr2:63698600-63726800	Weak transcription	Left Ventricle	heart
9	chr2:63698600-63733600	Weak transcription	Primary T cells from cord blood	blood
10	chr2:63702800-63719800	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr2:63705000-63723600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr2:63705200-63721400	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr2:63705200-63721400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr2:63705200-63724800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr2:63708400-63720400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr2:63709400-63724200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr2:63712200-63727600	Weak transcription	Fetal Heart	heart
18	chr2:63712400-63718400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr2:63712400-63720200	Weak transcription	Adipose Nuclei	Adipose
20	chr2:63712400-63722200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr2:63714200-63719400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr2:63714200-63725000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr2:63714400-63720200	Weak transcription	Thymus	Thymus
24	chr2:63715400-63722200	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr2:63715600-63727000	Weak transcription	Pancreas	Pancrea
26	chr2:63716200-63718400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr2:63716800-63733400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr2:63717600-63718800	Weak transcription	Ovary	ovary
29	chr2:63717800-63718800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr2:63718000-63720600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr2:63718000-63729600	Weak transcription	Aorta	Aorta

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