Variant report

Variant	rs573643543
Chromosome Location	chr22:22089013-22089014
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr22:22087956..22092439-chr22:22291559..22296073,7	K562	blood:
2	chr22:22088558..22091426-chr22:22293514..22295248,2	K562	blood:
3	chr22:22076308..22077911-chr22:22088836..22091303,2	MCF-7	breast:
4	chr22:22026397..22028078-chr22:22088852..22091514,2	MCF-7	breast:
5	chr22:22004165..22007450-chr22:22088545..22091929,3	K562	blood:
6	chr22:22088248..22093129-chr22:22216287..22223699,14	K562	blood:
7	chr22:21983948..21987333-chr22:22088191..22091412,3	K562	blood:
8	chr22:22088545..22090754-chr22:22292290..22294479,2	MCF-7	breast:
9	chr22:22019700..22022032-chr22:22088092..22090057,3	MCF-7	breast:
10	chr22:22088723..22091421-chr22:22896178..22899037,2	K562	blood:
11	chr22:21979975..21982573-chr22:22086401..22089371,3	K562	blood:
12	chr22:22088248..22091848-chr22:22218236..22223530,12	K562	blood:
13	chr22:22088241..22089939-chr22:22093963..22096125,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000224086	Chromatin interaction
ENSG00000244671	Chromatin interaction
ENSG00000161179	Chromatin interaction
ENSG00000100034	Chromatin interaction
ENSG00000185686	Chromatin interaction
ENSG00000100023	Chromatin interaction
ENSG00000161180	Chromatin interaction
ENSG00000100030	Chromatin interaction
ENSG00000212102	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1823866	chr22:21928916-22131125	Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	374 gene(s)	inside rSNPs	diseases
2	nsv948603	chr22:21928916-22601814	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	422 gene(s)	inside rSNPs	diseases
3	nsv948902	chr22:21928916-22657900	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	426 gene(s)	inside rSNPs	diseases
4	nsv1063962	chr22:21939722-22934593	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	477 gene(s)	inside rSNPs	diseases
5	nsv1058617	chr22:21939922-22934454	Weak transcription Bivalent Enhancer Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	477 gene(s)	inside rSNPs	diseases
6	nsv529694	chr22:21957411-22905068	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	474 gene(s)	inside rSNPs	diseases
7	nsv531797	chr22:21977700-22959729	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	476 gene(s)	inside rSNPs	diseases
8	nsv1066403	chr22:22010822-22352262	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
9	nsv510804	chr22:22024531-22132764	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
10	nsv1066964	chr22:22055123-22228745	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
11	nsv544604	chr22:22055123-22228745	Strong transcription Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
12	nsv1063134	chr22:22067645-22129322	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
13	nsv544605	chr22:22067645-22129322	Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
14	esv3423141	chr22:22074283-22135439	Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
15	nsv1060548	chr22:22079163-22126826	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
16	nsv531549	chr22:22082380-22116681	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
17	nsv588322	chr22:22086373-22186479	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
18	esv3437266	chr22:22088777-22091525	Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:22083000-22089400	Weak transcription	Lung	lung
2	chr22:22088000-22089400	Flanking Active TSS	Fetal Brain Female	brain
3	chr22:22088000-22089400	Flanking Active TSS	Dnd41	blood
4	chr22:22088200-22089200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr22:22088200-22089200	Enhancers	Psoas Muscle	Psoas
6	chr22:22088600-22089200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr22:22088600-22089200	Flanking Active TSS	Fetal Brain Male	brain
8	chr22:22088600-22089400	Enhancers	Placenta Amnion	Placenta Amnion
9	chr22:22088600-22089400	Flanking Active TSS	Thymus	Thymus
10	chr22:22088600-22089600	Flanking Active TSS	Fetal Heart	heart
11	chr22:22088600-22089800	Flanking Active TSS	Primary B cells from cord blood	blood
12	chr22:22088600-22089800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr22:22088800-22089200	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
14	chr22:22088800-22089200	Flanking Bivalent TSS/Enh	H9 Cell Line	embryonic stem cell
15	chr22:22088800-22089200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr22:22088800-22089200	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr22:22088800-22089200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
18	chr22:22088800-22089200	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
19	chr22:22088800-22089200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr22:22088800-22089200	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr22:22088800-22089200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr22:22088800-22089200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr22:22088800-22089200	Enhancers	Aorta	Aorta
24	chr22:22088800-22089200	Flanking Active TSS	Brain Angular Gyrus	brain
25	chr22:22088800-22089200	Flanking Active TSS	Brain Germinal Matrix	brain
26	chr22:22088800-22089200	Enhancers	Colon Smooth Muscle	Colon
27	chr22:22088800-22089200	Enhancers	Esophagus	oesophagus
28	chr22:22088800-22089200	Flanking Active TSS	Fetal Kidney	kidney
29	chr22:22088800-22089200	Flanking Active TSS	Fetal Muscle Trunk	muscle
30	chr22:22088800-22089200	Flanking Bivalent TSS/Enh	HUVEC	blood vessel
31	chr22:22088800-22089200	Bivalent Enhancer	NHEK	skin
32	chr22:22088800-22089400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
33	chr22:22088800-22089400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
34	chr22:22088800-22089400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr22:22088800-22089400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
36	chr22:22088800-22089400	Enhancers	Gastric	stomach
37	chr22:22088800-22089400	Enhancers	Pancreas	Pancrea
38	chr22:22088800-22089400	Enhancers	Right Ventricle	heart
39	chr22:22088800-22089400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
40	chr22:22088800-22089400	Enhancers	Small Intestine	intestine
41	chr22:22088800-22089400	Flanking Active TSS	Stomach Smooth Muscle	stomach
42	chr22:22088800-22089400	Flanking Active TSS	HSMMtube	muscle
43	chr22:22088800-22089600	Flanking Active TSS	Primary B cells from peripheral blood	blood
44	chr22:22088800-22089600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
45	chr22:22088800-22089600	Flanking Active TSS	Brain Cingulate Gyrus	brain
46	chr22:22088800-22089600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
47	chr22:22088800-22089600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
48	chr22:22088800-22089600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
49	chr22:22088800-22089600	Enhancers	Spleen	Spleen
50	chr22:22088800-22089800	Flanking Active TSS	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links