Variant report

Variant	rs57372970
Chromosome Location	chr10:55338091-55338092
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10762999	0.87[EUR][1000 genomes]
rs10825074	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10825078	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10825079	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10825081	0.83[EUR][1000 genomes]
rs10825082	0.84[EUR][1000 genomes]
rs10825083	0.85[EUR][1000 genomes]
rs10825084	0.85[EUR][1000 genomes]
rs10825085	0.85[EUR][1000 genomes]
rs10825086	0.85[EUR][1000 genomes]
rs10825087	0.85[EUR][1000 genomes]
rs10825088	0.85[EUR][1000 genomes]
rs10825089	0.85[EUR][1000 genomes]
rs11003708	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11003709	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11003724	0.87[EUR][1000 genomes]
rs11003726	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11003727	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11003731	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11003740	0.85[EUR][1000 genomes]
rs11003743	0.85[EUR][1000 genomes]
rs11003746	0.85[EUR][1000 genomes]
rs11003747	0.85[EUR][1000 genomes]
rs11003748	0.85[EUR][1000 genomes]
rs11003749	0.85[EUR][1000 genomes]
rs11003750	0.85[EUR][1000 genomes]
rs11003751	0.85[EUR][1000 genomes]
rs11003752	0.85[EUR][1000 genomes]
rs11003753	0.83[EUR][1000 genomes]
rs11003754	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11003755	0.83[EUR][1000 genomes]
rs11003756	0.84[EUR][1000 genomes]
rs11003762	0.85[EUR][1000 genomes]
rs11814564	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12412315	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12412620	0.85[EUR][1000 genomes]
rs12416362	0.85[EUR][1000 genomes]
rs12776465	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12778875	0.87[EUR][1000 genomes]
rs12781314	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1343016	0.87[EUR][1000 genomes]
rs1489824	0.85[EUR][1000 genomes]
rs1489828	0.87[EUR][1000 genomes]
rs1489836	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1602162	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1686679	0.85[EUR][1000 genomes]
rs16937617	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1825794	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2153948	0.84[EUR][1000 genomes]
rs2153949	0.85[EUR][1000 genomes]
rs2153950	0.85[EUR][1000 genomes]
rs2185842	0.84[EUR][1000 genomes]
rs2384268	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2384269	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2384300	0.85[EUR][1000 genomes]
rs2384301	0.85[EUR][1000 genomes]
rs4607982	0.85[EUR][1000 genomes]
rs4935081	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4935082	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs59556125	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61859909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7067829	0.87[EUR][1000 genomes]
rs7077970	0.87[EUR][1000 genomes]
rs7096810	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs721276	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7906396	0.89[EUR][1000 genomes]
rs825805	0.85[EUR][1000 genomes]
rs9416278	0.80[EUR][1000 genomes]
rs9416279	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9416280	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9416283	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9416284	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9416287	0.91[EUR][1000 genomes]
rs9988661	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752952	chr10:54900994-55497594	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1044282	chr10:55186501-55516392	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv540631	chr10:55186501-55516392	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1043501	chr10:55186701-55516253	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv540632	chr10:55186701-55516253	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1050323	chr10:55190079-55546575	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55337800-55338600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr10:55338000-55338400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr10:55338000-55339800	Enhancers	Fetal Lung	lung

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