Variant report

Variant	rs57391111
Chromosome Location	chr7:126225562-126225563
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10230311	0.82[AFR][1000 genomes]
rs10246061	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10274867	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11763805	0.97[EUR][1000 genomes]
rs11769015	0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11770188	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17149953	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17149975	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17149978	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17150011	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17610771	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2237744	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28453224	0.90[AFR][1000 genomes]
rs28612482	0.88[AFR][1000 genomes]
rs41463444	0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56142844	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56256561	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57903513	0.91[AFR][1000 genomes]
rs58699988	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60714151	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62477862	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62477869	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62479322	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73224961	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73224962	0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73224963	0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs734524	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv889187	chr7:126219766-126478190	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126216000-126229200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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