Variant report

Variant	rs57408618
Chromosome Location	chr1:172575798-172575799
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:172575618-172575807	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:172499065..172502708-chr1:172575408..172578949,3	K562	blood:
2	chr1:172568776..172571024-chr1:172573099..172576419,3	MCF-7	breast:
3	chr1:172502181..172504109-chr1:172575400..172577552,2	K562	blood:
4	chr1:172571108..172573486-chr1:172574030..172577529,4	MCF-7	breast:
5	chr1:172575077..172577075-chr1:172578250..172580358,2	MCF-7	breast:

No data

Variant related genes	Relation type
SUCO	TF binding region
ENSG00000094975	Chromatin interaction

rs_ID	r²[population]
rs7539915	1.00[AFR][1000 genomes]

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172540200-172581000	Weak transcription	Colonic Mucosa	Colon
2	chr1:172557400-172581200	Weak transcription	Fetal Heart	heart
3	chr1:172559000-172583400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr1:172560000-172578400	Weak transcription	HSMMtube	muscle
5	chr1:172560000-172580600	Weak transcription	Small Intestine	intestine
6	chr1:172560000-172581200	Weak transcription	Psoas Muscle	Psoas
7	chr1:172560000-172582400	Weak transcription	Brain Substantia Nigra	brain
8	chr1:172560200-172581800	Weak transcription	Hela-S3	cervix
9	chr1:172563800-172581200	Strong transcription	Primary B cells from cord blood	blood
10	chr1:172563800-172582000	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr1:172564400-172581000	Strong transcription	Primary neutrophils fromperipheralblood	blood
12	chr1:172564400-172582000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr1:172564600-172579200	Weak transcription	Fetal Kidney	kidney
14	chr1:172566000-172581200	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr1:172566400-172576800	Strong transcription	Primary T cells fromperipheralblood	blood
16	chr1:172566600-172581000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr1:172566600-172581000	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr1:172566600-172581200	Weak transcription	Fetal Stomach	stomach
19	chr1:172566600-172581800	Weak transcription	Esophagus	oesophagus
20	chr1:172566600-172582200	Weak transcription	Fetal Intestine Small	intestine
21	chr1:172566600-172595800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr1:172566800-172579200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr1:172567000-172578200	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr1:172567000-172579000	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr1:172567000-172580600	Weak transcription	Right Ventricle	heart
26	chr1:172567000-172580800	Weak transcription	Ovary	ovary
27	chr1:172567200-172579000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr1:172567200-172579000	Weak transcription	NHLF	lung
29	chr1:172567200-172581400	Weak transcription	A549	lung
30	chr1:172567400-172579000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr1:172567400-172582200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr1:172568000-172576800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr1:172568000-172578800	Weak transcription	Colon Smooth Muscle	Colon
34	chr1:172569600-172580800	Weak transcription	NHDF-Ad	bronchial
35	chr1:172570200-172579000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr1:172570400-172578800	Weak transcription	NH-A	brain
37	chr1:172570400-172579000	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr1:172570600-172577400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr1:172570600-172578200	Weak transcription	Left Ventricle	heart
40	chr1:172570600-172579000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr1:172570600-172579400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr1:172570600-172580000	Weak transcription	Spleen	Spleen
43	chr1:172570600-172580800	Weak transcription	Rectal Smooth Muscle	rectum
44	chr1:172570600-172581200	Weak transcription	Lung	lung
45	chr1:172570600-172581400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr1:172570600-172584000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr1:172570600-172585400	Weak transcription	Aorta	Aorta
48	chr1:172570800-172578600	Weak transcription	HepG2	liver
49	chr1:172570800-172579000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr1:172571000-172576400	Weak transcription	HMEC	breast

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