Variant report

Variant	rs574141577
Chromosome Location	chr14:56585226-56585227
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr14:56585026-56585345	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chr14:56585005-56585331	Hela-S3	cervix:	n/a	n/a
3	POLR2A	chr14:56584957-56585422	HL-60	blood:	n/a	n/a
4	MAX	chr14:56584949-56585303	HepG2	liver:	n/a	chr14:56585049-56585059
5	MAZ	chr14:56584116-56586945	IMR90	lung:	n/a	chr14:56585049-56585059 chr14:56584397-56584407 chr14:56585757-56585767
6	POLR2A	chr14:56584902-56585498	H1-hESC	embryonic stem cell:	n/a	n/a
7	TAF1	chr14:56584997-56585343	H1-neurons	neurons:	n/a	n/a
8	CTCF	chr14:56585100-56585250	GM12872	blood:	n/a	n/a
9	POLR2A	chr14:56584997-56585313	A549	lung:	n/a	n/a
10	CTCF	chr14:56585100-56585250	HAc	cerebellar:	n/a	n/a
11	TAF1	chr14:56584945-56585289	PFSK-1	brain:	n/a	n/a
12	CTCF	chr14:56585080-56585230	GM12868	blood:	n/a	n/a
13	MAX	chr14:56584358-56585450	A549	lung:	n/a	chr14:56585049-56585059 chr14:56584397-56584407
14	TAF1	chr14:56585040-56585302	K562	blood:	n/a	n/a
15	BACH1	chr14:56584490-56585294	H1-hESC	embryonic stem cell:	n/a	n/a
16	SIN3A	chr14:56584262-56585701	H1-hESC	embryonic stem cell:	n/a	chr14:56585591-56585604
17	CTCF	chr14:56585100-56585250	GM12870	blood:	n/a	n/a
18	POLR2A	chr14:56584965-56585338	ECC-1	luminal epithelium:	n/a	n/a
19	POLR2A	chr14:56584956-56587232	IMR90	lung:	n/a	n/a
20	MAX	chr14:56584471-56585258	NB4	blood:	n/a	chr14:56585049-56585059
21	MAZ	chr14:56584644-56585259	GM12878	blood:	n/a	chr14:56585049-56585059
22	TAF7	chr14:56584938-56585303	H1-hESC	embryonic stem cell:	n/a	n/a
23	POLR2A	chr14:56584521-56585368	H1-hESC	embryonic stem cell:	n/a	n/a
24	FOXP2	chr14:56584870-56585340	PFSK-1	brain:	n/a	n/a
25	POLR2A	chr14:56584487-56585339	Hela-S3	cervix:	n/a	n/a
26	POLR2A	chr14:56584973-56585310	H1-hESC	embryonic stem cell:	n/a	n/a
27	MAX	chr14:56585099-56585288	A549	lung:	n/a	n/a
28	POLR2A	chr14:56584970-56585293	GM12878	blood:	n/a	n/a
29	POLR2A	chr14:56584889-56585849	HUVEC	blood vessel:	n/a	n/a
30	REST	chr14:56585017-56585263	PFSK-1	brain:	n/a	chr14:56585213-56585231
31	TAF7	chr14:56584968-56585358	H1-hESC	embryonic stem cell:	n/a	n/a
32	TAF1	chr14:56585017-56585372	H1-neurons	neurons:	n/a	n/a
33	POLR2A	chr14:56584932-56585293	SK-N-MC	brain:	n/a	n/a
34	UBTF	chr14:56584503-56585534	K562	blood:	n/a	n/a
35	POLR2A	chr14:56584995-56585306	H1-hESC	embryonic stem cell:	n/a	n/a
36	EP300	chr14:56584965-56585302	H1-hESC	embryonic stem cell:	n/a	chr14:56585086-56585095
37	POLR2A	chr14:56585002-56585317	A549	lung:	n/a	n/a
38	MAX	chr14:56584950-56585322	K562	blood:	n/a	chr14:56585049-56585059
39	POLR2A	chr14:56584997-56585325	Hela-S3	cervix:	n/a	n/a
40	POLR2A	chr14:56585006-56585317	U87	brain:	n/a	n/a
41	SMARCB1	chr14:56584322-56586220	Hela-S3	cervix:	n/a	n/a
42	POLR2A	chr14:56584991-56585327	A549	lung:	n/a	n/a
43	TAF1	chr14:56585031-56585260	Hela-S3	cervix:	n/a	n/a
44	CTCF	chr14:56585080-56585230	GM12871	blood:	n/a	n/a
45	EP300	chr14:56584941-56585329	H1-hESC	embryonic stem cell:	n/a	chr14:56585086-56585095
46	POLR2A	chr14:56585099-56585269	ProgFib	skin:	n/a	n/a
47	FOXA2	chr14:56584435-56585403	A549	lung:	n/a	n/a
48	CTCF	chr14:56585043-56585232	A549	lung:	n/a	n/a
49	CTCF	chr14:56585120-56585270	GM12864	blood:	n/a	n/a
50	MXI1	chr14:56584118-56587663	IMR90	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:56582513..56585426-chr14:56585434..56588675,3	K562	blood:

Variant related genes	Relation type
PELI2	TF binding region
ENSG00000139946	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533129	chr14:56568535-56819234	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3401883	chr14:56584049-56586947	Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3343418	chr14:56584224-56586772	Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56583400-56587600	Active TSS	Ovary	ovary
2	chr14:56583800-56587400	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr14:56584000-56586200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr14:56584000-56586400	Active TSS	A549	lung
5	chr14:56584000-56586600	Active TSS	Duodenum Smooth Muscle	Duodenum
6	chr14:56584000-56586800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr14:56584000-56587000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
8	chr14:56584000-56587200	Active TSS	Rectal Mucosa Donor 29	rectum
9	chr14:56584000-56587200	Active TSS	Stomach Smooth Muscle	stomach
10	chr14:56584000-56587400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr14:56584000-56587400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr14:56584000-56587600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr14:56584200-56585400	Active TSS	Brain Germinal Matrix	brain
14	chr14:56584200-56585600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr14:56584200-56586000	Active TSS	ES-I3 Cell Line	embryonic stem cell
16	chr14:56584200-56586400	Active TSS	H1 Cell Line	embryonic stem cell
17	chr14:56584200-56586400	Active TSS	H9 Cell Line	embryonic stem cell
18	chr14:56584200-56586400	Active TSS	iPS-15b Cell Line	embryonic stem cell
19	chr14:56584200-56586400	Active TSS	Cortex derived primary cultured neurospheres	brain
20	chr14:56584200-56586400	Active TSS	Osteobl	bone
21	chr14:56584200-56586600	Active TSS	Thymus	Thymus
22	chr14:56584200-56586600	Active TSS	NH-A	brain
23	chr14:56584200-56586800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr14:56584200-56586800	Active TSS	Brain Anterior Caudate	brain
25	chr14:56584200-56586800	Active TSS	NHDF-Ad	bronchial
26	chr14:56584200-56586800	Active TSS	NHLF	lung
27	chr14:56584200-56587000	Active TSS	Brain Angular Gyrus	brain
28	chr14:56584200-56587000	Active TSS	Brain Inferior Temporal Lobe	brain
29	chr14:56584200-56587200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr14:56584200-56587200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr14:56584200-56587200	Active TSS	Colonic Mucosa	Colon
32	chr14:56584200-56587200	Active TSS	Fetal Intestine Large	intestine
33	chr14:56584200-56587200	Active TSS	Fetal Kidney	kidney
34	chr14:56584200-56587200	Active TSS	Right Atrium	heart
35	chr14:56584200-56587200	Active TSS	Right Ventricle	heart
36	chr14:56584400-56585400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr14:56584400-56585600	Bivalent/Poised TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr14:56584400-56585800	Active TSS	Placenta Amnion	Placenta Amnion
39	chr14:56584400-56586000	Active TSS	K562	blood
40	chr14:56584400-56586200	Active TSS	iPS-20b Cell Line	embryonic stem cell
41	chr14:56584400-56586200	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
42	chr14:56584400-56586400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr14:56584400-56586400	Active TSS	Fetal Stomach	stomach
44	chr14:56584400-56586400	Active TSS	Spleen	Spleen
45	chr14:56584400-56586600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr14:56584400-56586600	Active TSS	HUES48 Cell Line	embryonic stem cell
47	chr14:56584400-56586600	Active TSS	HUES64 Cell Line	embryonic stem cell
48	chr14:56584400-56586600	Active TSS	Sigmoid Colon	Sigmoid Colon
49	chr14:56584400-56586600	Active TSS	Small Intestine	intestine
50	chr14:56584400-56586800	Active TSS	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links