Variant report

Variant	rs57425656
Chromosome Location	chr14:65683839-65683840
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10131273	0.83[ASN][1000 genomes]
rs10143368	0.98[AFR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10151608	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11846944	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1679872	0.85[EUR][1000 genomes]
rs1679873	0.85[EUR][1000 genomes]
rs1679875	0.82[EUR][1000 genomes]
rs1679879	0.81[EUR][1000 genomes]
rs1760983	0.81[EUR][1000 genomes]
rs1760984	0.81[EUR][1000 genomes]
rs1760985	0.81[EUR][1000 genomes]
rs6573593	0.82[EUR][1000 genomes]
rs7159220	0.98[AFR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs753648	0.81[EUR][1000 genomes]
rs766906	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv564932	chr14:65660502-65691545	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv564933	chr14:65667546-65710580	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv992816	chr14:65678629-65686596	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65672800-65691400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:65674000-65691400	Weak transcription	Thymus	Thymus
3	chr14:65675600-65687000	Weak transcription	Fetal Intestine Small	intestine
4	chr14:65675800-65687000	Weak transcription	Fetal Intestine Large	intestine
5	chr14:65678600-65690600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr14:65678800-65684000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr14:65682000-65689200	Weak transcription	Right Atrium	heart
8	chr14:65682200-65688200	Weak transcription	Primary B cells from peripheral blood	blood
9	chr14:65683200-65684000	Enhancers	Brain Anterior Caudate	brain
10	chr14:65683200-65684200	Enhancers	Brain Cingulate Gyrus	brain
11	chr14:65683200-65684200	Enhancers	Brain Substantia Nigra	brain
12	chr14:65683400-65684000	Enhancers	Brain Hippocampus Middle	brain
13	chr14:65683600-65684200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr14:65683800-65684000	Enhancers	GM12878-XiMat	blood
15	chr14:65683800-65684200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr14:65683800-65688800	Weak transcription	Brain Angular Gyrus	brain
17	chr14:65683800-65688800	Weak transcription	Brain Inferior Temporal Lobe	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links