Variant report

Variant	rs57433075
Chromosome Location	chr15:58592650-58592651
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10162816	1.00[EUR][1000 genomes]
rs10467930	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10468015	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12592621	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16939944	1.00[AMR][1000 genomes]
rs174419	1.00[EUR][1000 genomes]
rs182005	1.00[EUR][1000 genomes]
rs1844185	1.00[EUR][1000 genomes]
rs261305	1.00[EUR][1000 genomes]
rs261321	1.00[EUR][1000 genomes]
rs261323	1.00[EUR][1000 genomes]
rs261325	1.00[EUR][1000 genomes]
rs261340	1.00[AMR][1000 genomes]
rs28578060	1.00[EUR][1000 genomes]
rs28705763	1.00[EUR][1000 genomes]
rs394492	1.00[EUR][1000 genomes]
rs396804	1.00[EUR][1000 genomes]
rs403821	1.00[EUR][1000 genomes]
rs412971	1.00[EUR][1000 genomes]
rs444258	1.00[EUR][1000 genomes]
rs483243	1.00[EUR][1000 genomes]
rs504846	1.00[AMR][1000 genomes]
rs566160	1.00[EUR][1000 genomes]
rs57003724	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57566316	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59086954	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59098465	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59983186	1.00[AMR][1000 genomes]
rs73410579	1.00[AMR][1000 genomes]
rs73414437	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73414442	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73416408	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73416411	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73416428	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73420505	1.00[AMR][1000 genomes]
rs73422356	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73422365	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73422376	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73422379	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73422388	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73422390	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73424228	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73426183	1.00[AMR][1000 genomes]
rs73428103	1.00[AMR][1000 genomes]
rs73428118	1.00[AMR][1000 genomes]
rs8024099	1.00[EUR][1000 genomes]
rs8034034	1.00[EUR][1000 genomes]
rs8040955	1.00[EUR][1000 genomes]
rs920914	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv833024	chr15:58447459-58621963	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv529717	chr15:58519923-58756814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1042201	chr15:58520746-58780710	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv904266	chr15:58580921-58689187	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58587400-58598800	Weak transcription	Fetal Kidney	kidney
2	chr15:58590200-58602400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:58590800-58592800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr15:58591000-58594600	Weak transcription	Liver	Liver
5	chr15:58591600-58594600	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr15:58591600-58594600	Weak transcription	Thymus	Thymus
7	chr15:58591600-58594800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr15:58591800-58594600	Weak transcription	Lung	lung
9	chr15:58592000-58594600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr15:58592000-58594800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr15:58592000-58595200	Weak transcription	Fetal Thymus	thymus
12	chr15:58592000-58598600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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