Variant report

Variant	rs57434799
Chromosome Location	chr2:12070098-12070099
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16857890	1.00[AMR][1000 genomes]
rs56249556	1.00[AMR][1000 genomes]
rs56709747	1.00[AMR][1000 genomes]
rs56811883	1.00[AMR][1000 genomes]
rs57243791	1.00[AMR][1000 genomes]
rs58449481	1.00[AMR][1000 genomes]
rs59456601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60509666	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73915835	1.00[AMR][1000 genomes]
rs73915837	1.00[AMR][1000 genomes]
rs73915838	1.00[AMR][1000 genomes]
rs73915862	1.00[AMR][1000 genomes]
rs73915866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73915868	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73915873	1.00[AMR][1000 genomes]
rs73915887	1.00[AMR][1000 genomes]
rs73915888	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003899	chr2:11789374-12248081	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv833403	chr2:11944552-12125634	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:12062200-12070800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:12062800-12071000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:12065200-12070400	Weak transcription	GM12878-XiMat	blood
4	chr2:12066200-12070200	Weak transcription	HepG2	liver
5	chr2:12069000-12071800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr2:12069400-12071000	Enhancers	Fetal Kidney	kidney
7	chr2:12069800-12071200	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr2:12069800-12071400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr2:12070000-12070400	Enhancers	Ovary	ovary
10	chr2:12070000-12070600	Enhancers	Primary T cells from cord blood	blood
11	chr2:12070000-12070600	Enhancers	Primary hematopoietic stem cells	blood
12	chr2:12070000-12070800	Enhancers	Primary T cells fromperipheralblood	blood
13	chr2:12070000-12071000	Enhancers	Fetal Lung	lung
14	chr2:12070000-12071000	Enhancers	HUVEC	blood vessel
15	chr2:12070000-12071200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr2:12070000-12071200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr2:12070000-12071200	Enhancers	Spleen	Spleen
18	chr2:12070000-12071400	Enhancers	Fetal Muscle Leg	muscle
19	chr2:12070000-12072200	Enhancers	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links