Variant report

Variant	rs574365114
Chromosome Location	chr2:181844609-181844610
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HEY1	chr2:181844157-181845616	HepG2	liver:	n/a	chr2:181845368-181845383 chr2:181845366-181845381 chr2:181845501-181845516
2	BCL3	chr2:181844341-181844645	GM12878	blood:	n/a	n/a
3	POLR2A	chr2:181843861-181845587	PBDE	blood:	n/a	n/a
4	UBTF	chr2:181844601-181846848	K562	blood:	n/a	n/a
5	POLR2A	chr2:181844264-181846086	K562	blood:	n/a	n/a
6	POLR2A	chr2:181844170-181846127	MCF10A-Er-Src	breast:	n/a	n/a
7	E2F6	chr2:181844606-181845301	A549	lung:	n/a	chr2:181844871-181844880 chr2:181845218-181845230 chr2:181845068-181845077
8	POLR2A	chr2:181844225-181846430	K562	blood:	n/a	n/a
9	POLR2A	chr2:181844265-181845573	K562	blood:	n/a	n/a
10	NFIC	chr2:181844582-181845582	HepG2	liver:	n/a	n/a
11	MYC	chr2:181844370-181846598	K562	blood:	n/a	chr2:181845600-181845610
12	POLR2A	chr2:181844329-181846225	K562	blood:	n/a	n/a
13	POLR2A	chr2:181843951-181845618	K562	blood:	n/a	n/a
14	E2F6	chr2:181844527-181845242	H1-hESC	embryonic stem cell:	n/a	chr2:181844871-181844880 chr2:181845218-181845230 chr2:181845068-181845077
15	CBX3	chr2:181844245-181845648	K562	blood:	n/a	n/a
16	ZMIZ1	chr2:181844172-181845575	K562	blood:	n/a	n/a
17	TBP	chr2:181844268-181846707	K562	blood:	n/a	n/a
18	POLR2A	chr2:181844211-181846233	K562	blood:	n/a	n/a
19	E2F6	chr2:181844584-181845923	K562	blood:	n/a	chr2:181844871-181844880 chr2:181845218-181845230 chr2:181845068-181845077 chr2:181845371-181845381 chr2:181845374-181845384
20	HCFC1	chr2:181844495-181845610	K562	blood:	n/a	n/a
21	TCF12	chr2:181844607-181845673	ECC-1	luminal epithelium:	n/a	chr2:181845106-181845116
22	CTCF	chr2:181844058-181845743	A549	lung:	n/a	chr2:181845349-181845362 chr2:181845489-181845507 chr2:181845491-181845504 chr2:181845109-181845122
23	GTF2F1	chr2:181844544-181845470	K562	blood:	n/a	n/a
24	YY1	chr2:181844583-181845675	HepG2	liver:	n/a	chr2:181845071-181845080 chr2:181845414-181845423 chr2:181845373-181845382 chr2:181845066-181845080 chr2:181844869-181844880 chr2:181845370-181845379 chr2:181845109-181845120 chr2:181845339-181845353 chr2:181844871-181844880 chr2:181845370-181845384 chr2:181845367-181845381 chr2:181845481-181845495 chr2:181845371-181845382
25	RCOR1	chr2:181843843-181846916	K562	blood:	n/a	n/a
26	MAZ	chr2:181844345-181846602	K562	blood:	n/a	chr2:181845600-181845610
27	MAX	chr2:181844139-181846402	HepG2	liver:	n/a	chr2:181845600-181845610
28	TBL1XR1	chr2:181843920-181845602	K562	blood:	n/a	n/a
29	BHLHE40	chr2:181844561-181845571	K562	blood:	n/a	chr2:181845110-181845126 chr2:181845367-181845383
30	MBD4	chr2:181844191-181844754	HepG2	liver:	n/a	n/a
31	JUND	chr2:181843918-181845647	K562	blood:	n/a	n/a
32	MAX	chr2:181844056-181845703	HepG2	liver:	n/a	chr2:181845600-181845610
33	MYBL2	chr2:181844154-181845587	HepG2	liver:	n/a	n/a
34	HEY1	chr2:181844560-181846252	K562	blood:	n/a	chr2:181845368-181845383 chr2:181845930-181845945 chr2:181845366-181845381 chr2:181845501-181845516
35	CUX1	chr2:181844300-181844815	K562	blood:	n/a	n/a
36	POLR2A	chr2:181844087-181845607	MCF10A-Er-Src	breast:	n/a	n/a
37	POLR2A	chr2:181844158-181845698	H1-hESC	embryonic stem cell:	n/a	n/a
38	ZNF143	chr2:181844581-181845666	GM12878	blood:	n/a	chr2:181845367-181845377 chr2:181844749-181844767
39	POLR2A	chr2:181843714-181845615	K562	blood:	n/a	n/a
40	TBP	chr2:181844280-181845528	HepG2	liver:	n/a	n/a
41	POLR2A	chr2:181844587-181845904	ProgFib	skin:	n/a	n/a
42	E2F4	chr2:181844545-181844651	MCF10A-Er-Src	breast:	n/a	n/a
43	POLR2A	chr2:181844595-181846058	MCF-7	breast:	n/a	n/a
44	RELA	chr2:181844521-181845578	GM19099	blood:	n/a	n/a
45	MAX	chr2:181844572-181845296	ECC-1	luminal epithelium:	n/a	n/a
46	TCF12	chr2:181844533-181845185	A549	lung:	n/a	chr2:181845106-181845116
47	HEY1	chr2:181844606-181845610	K562	blood:	n/a	chr2:181845368-181845383 chr2:181845366-181845381 chr2:181845501-181845516
48	POLR2A	chr2:181844176-181846544	IMR90	lung:	n/a	n/a
49	POLR2A	chr2:181844256-181845573	HepG2	liver:	n/a	n/a
50	MAX	chr2:181844591-181845697	K562	blood:	n/a	chr2:181845600-181845610

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:181829069..181832020-chr2:181844085..181846532,2	MCF-7	breast:

Variant related genes	Relation type
UBE2E3	TF binding region
ENSG00000170035	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875476	chr2:181767757-181854997	Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a
2	esv3439536	chr2:181844232-181847280	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:181843800-181848600	Active TSS	Brain Inferior Temporal Lobe	brain
2	chr2:181843800-181849200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr2:181844000-181844800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr2:181844000-181844800	Enhancers	Fetal Heart	heart
5	chr2:181844000-181844800	Flanking Active TSS	K562	blood
6	chr2:181844000-181845200	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr2:181844000-181845200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr2:181844000-181847400	Active TSS	Stomach Smooth Muscle	stomach
9	chr2:181844200-181844800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:181844200-181844800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr2:181844200-181844800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr2:181844200-181844800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
13	chr2:181844200-181844800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr2:181844200-181844800	Flanking Active TSS	Colon Smooth Muscle	Colon
15	chr2:181844200-181844800	Flanking Active TSS	Duodenum Mucosa	Duodenum
16	chr2:181844200-181844800	Flanking Active TSS	NHLF	lung
17	chr2:181844200-181845000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
18	chr2:181844200-181845000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr2:181844200-181845000	Flanking Active TSS	Primary hematopoietic stem cells	blood
20	chr2:181844200-181845000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr2:181844200-181845000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr2:181844200-181845000	Flanking Active TSS	Osteobl	bone
23	chr2:181844200-181847000	Active TSS	Pancreatic Islets	Pancreatic Islet
24	chr2:181844400-181844800	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr2:181844400-181844800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
26	chr2:181844400-181844800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
27	chr2:181844400-181844800	Flanking Active TSS	Primary T cells from cord blood	blood
28	chr2:181844400-181844800	Flanking Active TSS	Fetal Intestine Large	intestine
29	chr2:181844400-181844800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
30	chr2:181844400-181844800	Flanking Active TSS	HSMM	muscle
31	chr2:181844400-181845000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
32	chr2:181844400-181845000	Flanking Active TSS	Primary B cells from cord blood	blood
33	chr2:181844400-181845000	Flanking Active TSS	Primary B cells from peripheral blood	blood
34	chr2:181844400-181845000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
35	chr2:181844400-181845000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
36	chr2:181844400-181845000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
37	chr2:181844400-181845000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
38	chr2:181844400-181845000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr2:181844400-181845000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr2:181844400-181845000	Flanking Active TSS	Adipose Nuclei	Adipose
41	chr2:181844400-181845000	Flanking Active TSS	Colonic Mucosa	Colon
42	chr2:181844400-181845000	Flanking Active TSS	Fetal Thymus	thymus
43	chr2:181844400-181845000	Flanking Bivalent TSS/Enh	Dnd41	blood
44	chr2:181844400-181845000	Flanking Active TSS	HUVEC	blood vessel
45	chr2:181844400-181845000	Flanking Active TSS	NH-A	brain
46	chr2:181844400-181845000	Flanking Active TSS	NHDF-Ad	bronchial
47	chr2:181844400-181845200	Active TSS	Placenta Amnion	Placenta Amnion
48	chr2:181844400-181845200	Flanking Active TSS	HMEC	breast
49	chr2:181844400-181845400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr2:181844400-181846400	Active TSS	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links