Variant report

Variant	rs57441924
Chromosome Location	chr7:138243403-138243404
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:138212667..138215098-chr7:138241445..138243429,2	K562	blood:
2	chr7:138233250..138235909-chr7:138241361..138243581,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11976228	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11981542	0.86[ASN][1000 genomes]
rs13438568	1.00[EUR][1000 genomes]
rs28565882	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59552958	1.00[ASN][1000 genomes]
rs60367633	0.86[ASN][1000 genomes]
rs6947224	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831153	chr7:138078179-138265648	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1030956	chr7:138163169-138579519	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138213000-138244200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:138228400-138252600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr7:138234600-138243600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
4	chr7:138235000-138248600	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:138235000-138257400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr7:138235600-138245200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:138235800-138243800	Strong transcription	Placenta Amnion	Placenta Amnion
8	chr7:138235800-138253000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr7:138235800-138253200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
10	chr7:138236000-138254200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr7:138236800-138250800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
12	chr7:138237000-138251200	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
13	chr7:138237000-138251600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:138237000-138252400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
15	chr7:138237200-138252600	ZNF genes & repeats	Dnd41	blood
16	chr7:138237400-138245200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
17	chr7:138237400-138251400	ZNF genes & repeats	Primary B cells from cord blood	blood
18	chr7:138237600-138244200	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
19	chr7:138238000-138245000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
20	chr7:138238000-138245600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr7:138238200-138244800	ZNF genes & repeats	GM12878-XiMat	blood
22	chr7:138238200-138251200	ZNF genes & repeats	Adipose Nuclei	Adipose
23	chr7:138238400-138243600	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
24	chr7:138238400-138243600	ZNF genes & repeats	Left Ventricle	heart
25	chr7:138238400-138243800	Strong transcription	Brain Anterior Caudate	brain
26	chr7:138238400-138244000	ZNF genes & repeats	Esophagus	oesophagus
27	chr7:138238400-138244200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr7:138238400-138244400	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
29	chr7:138238400-138244600	ZNF genes & repeats	Aorta	Aorta
30	chr7:138238400-138244600	ZNF genes & repeats	Pancreas	Pancrea
31	chr7:138238400-138245600	ZNF genes & repeats	Spleen	Spleen
32	chr7:138238400-138250800	ZNF genes & repeats	Thymus	Thymus
33	chr7:138238400-138251400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr7:138238400-138251400	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
35	chr7:138238400-138251400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
36	chr7:138238400-138253600	ZNF genes & repeats	Fetal Intestine Small	intestine
37	chr7:138238600-138244200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
38	chr7:138238600-138244600	ZNF genes & repeats	Lung	lung
39	chr7:138238600-138251200	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
40	chr7:138238600-138251600	ZNF genes & repeats	Brain Germinal Matrix	brain
41	chr7:138238600-138251800	ZNF genes & repeats	Fetal Muscle Leg	muscle
42	chr7:138238600-138252200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
43	chr7:138238800-138245200	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr7:138239200-138251000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
45	chr7:138239400-138243600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
46	chr7:138239400-138244400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr7:138239400-138244600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr7:138239400-138244600	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
49	chr7:138239400-138251000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
50	chr7:138239400-138252600	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum

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