Variant report

Variant	rs574486522
Chromosome Location	chr2:210538349-210538350
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754281	chr2:210484777-210543711	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv875765	chr2:210537660-210618203	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210518200-210543200	Weak transcription	Aorta	Aorta
2	chr2:210528600-210550200	Weak transcription	Brain Substantia Nigra	brain
3	chr2:210528800-210550200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr2:210531400-210587800	Weak transcription	Brain Angular Gyrus	brain
5	chr2:210536400-210544800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr2:210536600-210539400	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr2:210536600-210545400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr2:210536600-210552200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr2:210537000-210541800	Weak transcription	Brain Anterior Caudate	brain
10	chr2:210537000-210543200	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr2:210537000-210545800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr2:210537000-210550400	Weak transcription	Brain Hippocampus Middle	brain
13	chr2:210537000-210596800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr2:210537200-210543800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr2:210537600-210547000	Weak transcription	Brain Germinal Matrix	brain
16	chr2:210537600-210550200	Weak transcription	Fetal Brain Male	brain
17	chr2:210537800-210545000	Weak transcription	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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