The 2.0 version of rSNPBase

Variant report

Variant rs57455684
Chromosome Location chr5:80991342-80991343
allele C/G/T
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:80967400-80991400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
2 chr5:80971200-80995800 Weak transcription HSMMtube muscle
3 chr5:80976000-80996000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
4 chr5:80980600-80996000 Weak transcription Primary T helper cells fromperipheralblood blood
5 chr5:80983800-80992400 Weak transcription Stomach Smooth Muscle stomach
6 chr5:80983800-81011600 Weak transcription Left Ventricle heart
7 chr5:80984000-80996000 Weak transcription Brain Inferior Temporal Lobe brain
8 chr5:80984000-81011600 Weak transcription Lung lung
9 chr5:80984200-80995200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
10 chr5:80984200-80996000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
11 chr5:80984200-81032000 Weak transcription Esophagus oesophagus
12 chr5:80984400-81015000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
13 chr5:80984600-80992200 Weak transcription Thymus Thymus
14 chr5:80984600-80992400 Weak transcription Skeletal Muscle Female skeletal muscle
15 chr5:80984600-80992600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
16 chr5:80984600-80995800 Weak transcription Aorta Aorta
17 chr5:80985600-80996200 Weak transcription Primary T helper cells PMA-I stimulated --
18 chr5:80988000-80992000 Weak transcription Fetal Brain Female brain
19 chr5:80988600-80995000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
20 chr5:80988600-80995400 Weak transcription Primary B cells from cord blood blood
21 chr5:80988600-80995800 Weak transcription Primary T cells from cord blood blood
22 chr5:80988600-80995800 Weak transcription Fetal Lung lung
23 chr5:80988800-80992000 Weak transcription Primary hematopoietic stem cells short term culture blood
24 chr5:80989200-80992000 Weak transcription Breast Myoepithelial Primary Cells Breast
25 chr5:80989200-80992000 Weak transcription Psoas Muscle Psoas
26 chr5:80989200-80995000 Weak transcription Brain Cingulate Gyrus brain
27 chr5:80989200-80995400 Weak transcription Fetal Muscle Trunk muscle
28 chr5:80989200-80995600 Weak transcription Fetal Stomach stomach
29 chr5:80989400-80991800 Weak transcription Cortex derived primary cultured neurospheres brain
30 chr5:80990000-80992000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
31 chr5:80990000-80992200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
32 chr5:80990200-80992600 Weak transcription Primary hematopoietic stem cells blood
33 chr5:80990600-80995800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
34 chr5:80990800-80992000 Weak transcription Primary B cells from peripheral blood blood
35 chr5:80990800-80999200 Weak transcription Ovary ovary
36 chr5:80991000-80991600 Weak transcription Fetal Thymus thymus
37 chr5:80991000-80991600 Weak transcription Dnd41 blood
38 chr5:80991000-80992200 Weak transcription Right Atrium heart
39 chr5:80991000-80993000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
40 chr5:80991000-80995400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
41 chr5:80991200-80992600 Weak transcription Primary T helper naive cells fromperipheralblood blood

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Last update: Aug 31, 2015