Variant report

Variant	rs57465464
Chromosome Location	chr18:24521885-24521886
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12326934	0.91[AMR][1000 genomes]
rs16943055	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3889349	0.96[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3889350	0.86[AMR][1000 genomes]
rs55976171	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs60167332	0.82[AMR][1000 genomes]
rs6508460	0.91[AMR][1000 genomes]
rs6508461	0.91[AMR][1000 genomes]
rs67822335	0.86[AMR][1000 genomes]
rs7232288	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7243196	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8085829	0.91[AMR][1000 genomes]
rs8086337	0.82[AMR][1000 genomes]
rs8088793	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8091201	0.91[AMR][1000 genomes]
rs9807634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833600	chr18:24473894-24681019	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv909472	chr18:24479960-24614192	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24505400-24527200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr18:24508400-24529000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr18:24508600-24536800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr18:24518200-24522600	Weak transcription	Fetal Intestine Small	intestine
5	chr18:24520800-24522000	Enhancers	Fetal Muscle Leg	muscle
6	chr18:24520800-24522200	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr18:24521000-24522000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr18:24521000-24522200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr18:24521000-24522400	Enhancers	Fetal Lung	lung
10	chr18:24521200-24522200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr18:24521600-24522000	Enhancers	Adipose Nuclei	Adipose
12	chr18:24521600-24522000	Enhancers	Ovary	ovary
13	chr18:24521600-24522000	Flanking Active TSS	Psoas Muscle	Psoas
14	chr18:24521600-24522000	Active TSS	Skeletal Muscle Male	skeletal muscle
15	chr18:24521600-24522000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
16	chr18:24521800-24524600	Weak transcription	Rectal Smooth Muscle	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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