Variant report

Variant	rs574666390
Chromosome Location	chr3:23282274-23282275
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834636	chr3:23138653-23301443	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1014701	chr3:23257658-23416094	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv589947	chr3:23277838-23403943	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1002823	chr3:23277838-23623083	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv3332651	chr3:23281828-23282422	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23272600-23283000	Weak transcription	HMEC	breast
2	chr3:23274600-23283000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr3:23274800-23298200	Weak transcription	Aorta	Aorta
4	chr3:23278600-23289600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:23278800-23283000	Weak transcription	Left Ventricle	heart
6	chr3:23279400-23282800	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr3:23279800-23282800	Enhancers	Brain Angular Gyrus	brain
8	chr3:23280000-23282800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr3:23280000-23282800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr3:23280200-23282600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr3:23280200-23282600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr3:23280200-23282800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr3:23280200-23291400	Weak transcription	Psoas Muscle	Psoas
14	chr3:23280400-23290600	Weak transcription	Primary B cells from peripheral blood	blood
15	chr3:23280800-23282600	Enhancers	Brain Hippocampus Middle	brain
16	chr3:23280800-23283600	Enhancers	Brain Anterior Caudate	brain
17	chr3:23280800-23285000	Enhancers	Brain Cingulate Gyrus	brain
18	chr3:23281000-23282600	Enhancers	Brain Substantia Nigra	brain
19	chr3:23281200-23282600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr3:23281400-23282400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr3:23281400-23282800	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr3:23281400-23298200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr3:23281600-23282600	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr3:23282000-23283200	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr3:23282000-23290200	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr3:23282200-23282600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr3:23282200-23284000	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr3:23282200-23285800	Weak transcription	Liver	Liver
29	chr3:23282200-23289000	Weak transcription	Adipose Nuclei	Adipose
30	chr3:23282200-23294600	Weak transcription	A549	lung

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