Variant report

Variant	rs574791110
Chromosome Location	chr7:104626710-104626711
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:104626171..104628640-chr7:104635063..104636890,2	MCF-7	breast:
2	chr7:104584293..104587228-chr7:104624517..104626967,3	K562	blood:
3	chr7:104622776..104625398-chr7:104626077..104628432,3	MCF-7	breast:
4	chr7:104583958..104587024-chr7:104622658..104627290,6	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SRPK2-1	chr7:104622194-104631612	NONHSAT122589

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029283	chr7:104571741-104729168	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	132 gene(s)	inside rSNPs	diseases
2	nsv888927	chr7:104614664-104781644	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
3	nsv526422	chr7:104618318-104632980	Genic enhancers Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv2829879	chr7:104618318-104652671	Transcr. at gene 5' and 3' Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
5	nsv608068	chr7:104622402-104757483	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
6	nsv437561	chr7:104626690-104647571	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104625000-104626800	Weak transcription	Pancreas	Pancrea
2	chr7:104625000-104629400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:104625000-104629400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:104625000-104629400	Weak transcription	Esophagus	oesophagus
5	chr7:104625000-104629400	Weak transcription	Lung	lung
6	chr7:104625000-104629400	Weak transcription	Ovary	ovary
7	chr7:104625000-104629400	Weak transcription	Small Intestine	intestine
8	chr7:104625000-104631400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr7:104625000-104631400	Weak transcription	Spleen	Spleen
10	chr7:104625000-104633600	Weak transcription	Aorta	Aorta
11	chr7:104625000-104641200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr7:104625000-104647400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr7:104625200-104626800	Enhancers	Fetal Heart	heart
14	chr7:104625200-104627000	Enhancers	Brain Angular Gyrus	brain
15	chr7:104625200-104627000	Enhancers	Duodenum Mucosa	Duodenum
16	chr7:104625200-104627000	Enhancers	Fetal Intestine Small	intestine
17	chr7:104625200-104627200	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr7:104625200-104627200	Enhancers	Fetal Lung	lung
19	chr7:104625200-104627400	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr7:104625200-104627400	Enhancers	Fetal Kidney	kidney
21	chr7:104625200-104627800	Weak transcription	Fetal Muscle Trunk	muscle
22	chr7:104625200-104628000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr7:104625200-104628400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr7:104625200-104629400	Weak transcription	Fetal Stomach	stomach
25	chr7:104625200-104630600	Enhancers	Osteobl	bone
26	chr7:104625200-104631200	Enhancers	Liver	Liver
27	chr7:104625200-104643800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr7:104625400-104627200	Enhancers	Brain Cingulate Gyrus	brain
29	chr7:104625400-104627400	Enhancers	Brain Substantia Nigra	brain
30	chr7:104625400-104627600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr7:104625400-104627800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr7:104625400-104627800	Enhancers	Brain Anterior Caudate	brain
33	chr7:104625400-104628000	Enhancers	Muscle Satellite Cultured Cells	--
34	chr7:104625400-104628000	Enhancers	Colonic Mucosa	Colon
35	chr7:104625400-104629400	Weak transcription	Right Ventricle	heart
36	chr7:104625400-104629400	Weak transcription	Thymus	Thymus
37	chr7:104625400-104629400	Enhancers	NHLF	lung
38	chr7:104625400-104633200	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr7:104625400-104643000	Weak transcription	Fetal Brain Female	brain
40	chr7:104625600-104626800	Weak transcription	Primary B cells from peripheral blood	blood
41	chr7:104625600-104626800	Weak transcription	Primary T cells from cord blood	blood
42	chr7:104625600-104626800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr7:104625600-104626800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr7:104625600-104626800	Weak transcription	Placenta	Placenta
45	chr7:104625600-104627000	Genic enhancers	Primary B cells from cord blood	blood
46	chr7:104625600-104627000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr7:104625600-104627200	Enhancers	Brain Hippocampus Middle	brain
48	chr7:104625600-104627200	Enhancers	Brain Inferior Temporal Lobe	brain
49	chr7:104625600-104627400	Enhancers	HepG2	liver
50	chr7:104625600-104627400	Genic enhancers	HSMM	muscle

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