Variant report

Variant	rs574826658
Chromosome Location	chr6:164257945-164257946
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr6:164257655-164258166	SH-SY5Y	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:164242074..164244714-chr6:164257736..164260576,2	K562	blood:

Variant related genes	Relation type
RN7SL366P	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv1798922	chr6:164257563-164298780	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164250000-164258200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:164255800-164258800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:164256000-164258400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:164256800-164258000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:164256800-164258200	Enhancers	Brain Germinal Matrix	brain
6	chr6:164256800-164260600	Enhancers	Fetal Heart	heart
7	chr6:164257000-164258200	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr6:164257000-164258800	Weak transcription	Right Ventricle	heart
9	chr6:164257400-164258400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:164257600-164258000	Enhancers	Brain Cingulate Gyrus	brain
11	chr6:164257600-164258200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:164257600-164258200	Enhancers	Fetal Brain Female	brain
13	chr6:164257600-164258600	Weak transcription	Fetal Muscle Trunk	muscle
14	chr6:164257600-164258800	Enhancers	Fetal Lung	lung
15	chr6:164257600-164258800	Enhancers	Fetal Stomach	stomach
16	chr6:164257800-164258000	Enhancers	Brain Substantia Nigra	brain
17	chr6:164257800-164258200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:164257800-164258200	Enhancers	Brain Anterior Caudate	brain
19	chr6:164257800-164258200	Flanking Active TSS	Brain Hippocampus Middle	brain
20	chr6:164257800-164258200	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr6:164257800-164258400	Enhancers	Fetal Brain Male	brain
22	chr6:164257800-164258600	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr6:164257800-164259200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:164257800-164259600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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