Variant report

Variant	rs57492756
Chromosome Location	chr7:105222738-105222739
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:61)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZBTB33	chr7:105222429-105222791	K562	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:105222699-105222749	HEEpiC	esophagus:	n/a
2	chr7:105222699-105222749	HRE	kidney:	n/a
3	chr7:105222699-105222749	AG04449	skin:	fetal
4	chr7:105222699-105222749	GM12878	blood:	n/a
5	chr7:105222699-105222749	HCT-116	colon:	n/a
6	chr7:105222699-105222749	MCF-7	breast:	n/a
7	chr7:105222699-105222749	Jurkat	blood:	n/a
8	chr7:105222699-105222749	PFSK-1	brain:	n/a
9	chr7:105222699-105222749	SKMC	muscle:	n/a
10	chr7:105222699-105222749	NH-A	brain:	n/a
11	chr7:105222699-105222749	NB4	blood:	n/a
12	chr7:105222699-105222749	BJ	skin:	n/a
13	chr7:105222699-105222749	GM19239	blood:	n/a
14	chr7:105222699-105222749	AG09319	gingival:	n/a
15	chr7:105222699-105222749	IMR90	lung:	fetal
16	chr7:105222699-105222749	Hepatocyte	liver:	n/a
17	chr7:105222699-105222749	SK-N-SH_RA	brain:	n/a
18	chr7:105222699-105222749	ProgFib	skin:	n/a
19	chr7:105222699-105222749	AoSMC	blood vessel:	n/a
20	chr7:105222699-105222749	GM06990	blood:	n/a
21	chr7:105222699-105222749	HNPCEpiC	eye:	n/a
22	chr7:105222699-105222749	GM12892	blood:	n/a
23	chr7:105222699-105222749	HUVEC	blood vessel:	n/a
24	chr7:105222699-105222749	NHDF-neo	bronchial:	n/a
25	chr7:105222699-105222749	PANC-1	pancreas:	n/a
26	chr7:105222699-105222749	HIPEpiC	eye:	n/a
27	chr7:105222699-105222749	AG04450	lung:	fetal
28	chr7:105222699-105222749	AG09309	skin:	n/a
29	chr7:105222699-105222749	HPAEpiC	pulmonary alveolar:	n/a
30	chr7:105222699-105222749	SAEC	small airway:	n/a
31	chr7:105222699-105222749	HEK293	kidney:	embryo
32	chr7:105222699-105222749	HL-60	blood:	n/a
33	chr7:105222699-105222749	T-47D	breast:	n/a
34	chr7:105222699-105222749	RPTEC	kidney:	n/a
35	chr7:105222699-105222749	U87	brain:	n/a
36	chr7:105222699-105222749	PrEC	prostate:	n/a
37	chr7:105222699-105222749	HRPEpiC	eye:	n/a
38	chr7:105222699-105222749	GM12891	blood:	n/a
39	chr7:105222699-105222749	H1-hESC	embryonic stem cell:	embryo
40	chr7:105222699-105222749	ECC-1	luminal epithelium:	n/a
41	chr7:105222699-105222749	HAEpiC	amniotic membrane:	n/a
42	chr7:105222699-105222749	Caco-2	colon:	n/a
43	chr7:105222699-105222749	MCF10A-Er-Src	breast:	n/a
44	chr7:105222699-105222749	SK-N-MC	brain:	n/a
45	chr7:105222699-105222749	A549	lung:	n/a
46	chr7:105222699-105222749	HRCEpiC	kidney:	n/a
47	chr7:105222699-105222749	ovcar-3	ovarian:	n/a
48	chr7:105222699-105222749	K562	blood:	n/a
49	chr7:105222699-105222749	Hela-S3	cervix:	n/a
50	chr7:105222699-105222749	HMEC	breast:	n/a

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:105171405..105173628-chr7:105221272..105223628,2	MCF-7	breast:
2	chr7:105159598..105163989-chr7:105219696..105223115,7	MCF-7	breast:
3	chr19:5690148..5691832-chr7:105220231..105223207,2	K562	blood:

No data

Variant related genes	Relation type
EFCAB10	TF binding region
EFCAB10	CpG island
ENSG00000135249	Chromatin interaction
ENSG00000091127	Chromatin interaction
ENSG00000130255	Chromatin interaction

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs11556986	1.00[ASN][1000 genomes]
rs1569134	1.00[ASN][1000 genomes]
rs1721500	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17343556	1.00[ASN][1000 genomes]
rs1976969	0.89[ASN][1000 genomes]
rs3892297	1.00[ASN][1000 genomes]
rs3892298	1.00[ASN][1000 genomes]
rs4074939	1.00[ASN][1000 genomes]
rs4083246	1.00[ASN][1000 genomes]
rs55691539	1.00[ASN][1000 genomes]
rs55700120	1.00[ASN][1000 genomes]
rs55701318	1.00[ASN][1000 genomes]
rs55740553	1.00[ASN][1000 genomes]
rs55794529	1.00[ASN][1000 genomes]
rs55906043	1.00[ASN][1000 genomes]
rs55922564	1.00[ASN][1000 genomes]
rs55967123	1.00[ASN][1000 genomes]
rs55983796	1.00[ASN][1000 genomes]
rs56055535	1.00[ASN][1000 genomes]
rs56144672	1.00[ASN][1000 genomes]
rs56165465	1.00[ASN][1000 genomes]
rs56177071	1.00[ASN][1000 genomes]
rs56251768	1.00[ASN][1000 genomes]
rs56379434	0.89[ASN][1000 genomes]
rs58194204	1.00[ASN][1000 genomes]
rs6943132	1.00[ASN][1000 genomes]
rs6944787	1.00[ASN][1000 genomes]
rs6953851	1.00[ASN][1000 genomes]
rs6955796	1.00[ASN][1000 genomes]
rs6956234	1.00[ASN][1000 genomes]
rs6956249	1.00[ASN][1000 genomes]
rs6957192	1.00[ASN][1000 genomes]
rs6957424	1.00[ASN][1000 genomes]
rs6961233	1.00[ASN][1000 genomes]
rs6961863	1.00[ASN][1000 genomes]
rs6969426	1.00[ASN][1000 genomes]
rs6973263	1.00[ASN][1000 genomes]
rs6973974	1.00[ASN][1000 genomes]
rs6977748	1.00[ASN][1000 genomes]
rs73190133	1.00[ASN][1000 genomes]
rs73190149	1.00[ASN][1000 genomes]
rs73190151	1.00[ASN][1000 genomes]
rs73190155	1.00[ASN][1000 genomes]
rs73190156	1.00[ASN][1000 genomes]
rs73190158	1.00[ASN][1000 genomes]
rs73190161	1.00[ASN][1000 genomes]
rs73190163	1.00[ASN][1000 genomes]
rs73190166	1.00[ASN][1000 genomes]
rs73190167	1.00[ASN][1000 genomes]
rs73190169	1.00[ASN][1000 genomes]
rs73190172	1.00[ASN][1000 genomes]
rs73190174	1.00[ASN][1000 genomes]
rs73190175	1.00[ASN][1000 genomes]
rs73190178	1.00[ASN][1000 genomes]
rs73190179	1.00[ASN][1000 genomes]
rs73190181	1.00[ASN][1000 genomes]
rs73190183	1.00[ASN][1000 genomes]
rs73190184	1.00[ASN][1000 genomes]
rs73190186	1.00[ASN][1000 genomes]
rs73190187	1.00[ASN][1000 genomes]
rs73190189	1.00[ASN][1000 genomes]
rs73190193	1.00[ASN][1000 genomes]
rs73190200	1.00[ASN][1000 genomes]
rs73190201	1.00[ASN][1000 genomes]
rs73190202	1.00[ASN][1000 genomes]
rs73192105	1.00[ASN][1000 genomes]
rs73192107	1.00[ASN][1000 genomes]
rs73192115	1.00[ASN][1000 genomes]
rs73192120	1.00[ASN][1000 genomes]
rs73192122	1.00[ASN][1000 genomes]
rs73192124	1.00[ASN][1000 genomes]
rs73192125	1.00[ASN][1000 genomes]
rs73192126	1.00[ASN][1000 genomes]
rs73192134	1.00[ASN][1000 genomes]
rs73192141	1.00[ASN][1000 genomes]
rs73192143	1.00[ASN][1000 genomes]
rs73192144	1.00[ASN][1000 genomes]
rs73192145	1.00[ASN][1000 genomes]
rs73192149	1.00[ASN][1000 genomes]
rs73192150	1.00[ASN][1000 genomes]
rs73192151	1.00[ASN][1000 genomes]
rs73192152	1.00[ASN][1000 genomes]
rs73192153	1.00[ASN][1000 genomes]
rs7777343	1.00[ASN][1000 genomes]
rs9769403	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv981568	chr7:105222012-105223485	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105222000-105229800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr7:105222200-105222800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:105222200-105229800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr7:105222200-105253000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:105222400-105225400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr7:105222600-105222800	Enhancers	A549	lung

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