Variant report

Variant	rs575137596
Chromosome Location	chr15:76626576-76626577
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr15:76626091-76626585	A549	lung:	n/a	chr15:76626363-76626376 chr15:76626361-76626379
2	RAD21	chr15:76626118-76626637	A549	lung:	n/a	chr15:76626355-76626369 chr15:76626362-76626375 chr15:76626359-76626378
3	RAD21	chr15:76626075-76626661	MCF-7	breast:	n/a	chr15:76626355-76626369 chr15:76626362-76626375 chr15:76626359-76626378
4	CEBPB	chr15:76626251-76626857	HepG2	liver:	n/a	n/a
5	MXI1	chr15:76625829-76626712	HepG2	liver:	n/a	n/a
6	RAD21	chr15:76626013-76626689	MCF-7	breast:	n/a	chr15:76626355-76626369 chr15:76626362-76626375 chr15:76626359-76626378
7	CTCF	chr15:76625996-76626697	SK-N-SH	brain:	n/a	chr15:76626363-76626376 chr15:76626361-76626379
8	RCOR1	chr15:76626178-76627069	K562	blood:	n/a	n/a
9	CTCF	chr15:76626500-76626650	HFF-Myc	foreskin:	n/a	n/a
10	CTCF	chr15:76626151-76626593	K562	blood:	n/a	chr15:76626363-76626376 chr15:76626361-76626379
11	BCL3	chr15:76625999-76626831	A549	lung:	n/a	n/a
12	FOXA2	chr15:76625965-76626619	HepG2	liver:	n/a	n/a
13	RAD21	chr15:76625967-76626622	A549	lung:	n/a	chr15:76626355-76626369 chr15:76626362-76626375 chr15:76626359-76626378
14	RAD21	chr15:76626064-76626779	A549	lung:	n/a	chr15:76626355-76626369 chr15:76626362-76626375 chr15:76626359-76626378
15	BHLHE40	chr15:76626294-76626631	K562	blood:	n/a	n/a
16	CTCF	chr15:76626073-76626637	HCT-116	colon:	n/a	chr15:76626363-76626376 chr15:76626361-76626379
17	POLR2A	chr15:76625979-76626684	HepG2	liver:	n/a	n/a
18	SP1	chr15:76626068-76626608	A549	lung:	n/a	chr15:76626537-76626550
19	CTCF	chr15:76626500-76626650	K562	blood:	n/a	n/a
20	CTCF	chr15:76626069-76626630	MCF-7	breast:	n/a	chr15:76626363-76626376 chr15:76626361-76626379
21	HCFC1	chr15:76626313-76626600	K562	blood:	n/a	n/a
22	RCOR1	chr15:76626205-76627119	K562	blood:	n/a	n/a
23	MYBL2	chr15:76625947-76626602	HepG2	liver:	n/a	n/a
24	CTCF	chr15:76626082-76626615	K562	blood:	n/a	chr15:76626363-76626376 chr15:76626361-76626379
25	POLR2A	chr15:76626416-76626655	HepG2	liver:	n/a	n/a
26	MAZ	chr15:76626137-76626756	K562	blood:	n/a	n/a
27	RAD21	chr15:76625843-76626765	SK-N-SH	brain:	n/a	chr15:76626355-76626369 chr15:76626362-76626375 chr15:76626359-76626378
28	MAZ	chr15:76626051-76626597	HepG2	liver:	n/a	n/a
29	ZC3H11A	chr15:76626301-76626656	K562	blood:	n/a	n/a
30	CTCF	chr15:76625783-76626790	A549	lung:	n/a	chr15:76625824-76625832 chr15:76626363-76626376 chr15:76626361-76626379
31	MAFK	chr15:76626234-76626601	HepG2	liver:	n/a	n/a
32	CUX1	chr15:76626320-76626599	K562	blood:	n/a	n/a
33	RAD21	chr15:76626071-76626636	H1-hESC	embryonic stem cell:	n/a	chr15:76626355-76626369 chr15:76626362-76626375 chr15:76626359-76626378
34	RAD21	chr15:76626070-76626684	HCT-116	colon:	n/a	chr15:76626355-76626369 chr15:76626362-76626375 chr15:76626359-76626378
35	CTCF	chr15:76626115-76626663	MCF-7	breast:	n/a	chr15:76626363-76626376 chr15:76626361-76626379
36	RAD21	chr15:76626139-76626586	H1-hESC	embryonic stem cell:	n/a	chr15:76626355-76626369 chr15:76626362-76626375 chr15:76626359-76626378
37	ZMIZ1	chr15:76626205-76626580	K562	blood:	n/a	n/a
38	MAX	chr15:76625856-76626737	HepG2	liver:	n/a	n/a
39	RXRA	chr15:76626061-76626604	HepG2	liver:	n/a	chr15:76626359-76626379
40	MYBL2	chr15:76625963-76626603	HepG2	liver:	n/a	n/a
41	TBP	chr15:76626488-76626670	K562	blood:	n/a	n/a
42	RAD21	chr15:76626109-76626597	ECC-1	luminal epithelium:	n/a	chr15:76626355-76626369 chr15:76626362-76626375 chr15:76626359-76626378
43	SMC3	chr15:76625938-76626690	SK-N-SH	brain:	n/a	chr15:76626366-76626376 chr15:76626363-76626377

No.	Distal block	Cell Line	Cell type
1	chr15:76536052..76538600-chr15:76625414..76627527,2	MCF-7	breast:
2	chr15:76601310..76610583-chr15:76618699..76634643,40	K562	blood:
3	chr15:76591467..76593414-chr15:76626364..76628156,2	K562	blood:
4	chr1:112646202..112647038-chr15:76625778..76626625,2	MCF-7	breast:
5	chr15:76598820..76601362-chr15:76625646..76628540,2	K562	blood:
6	chr15:76527312..76528369-chr15:76625920..76626784,4	MCF-7	breast:
7	chr15:76624512..76627161-chr15:76627320..76629077,4	MCF-7	breast:
8	chr15:76440174..76440912-chr15:76625983..76626603,2	MCF-7	breast:
9	chr15:76600511..76607655-chr15:76613791..76629933,32	MCF-7	breast:
10	chr15:76602419..76607116-chr15:76626572..76631104,6	MCF-7	breast:
11	chr15:76601574..76614388-chr15:76623703..76634730,38	K562	blood:
12	chr15:76617028..76618858-chr15:76625946..76627693,2	MCF-7	breast:
13	chr15:76482924..76483751-chr15:76625816..76626899,5	MCF-7	breast:
14	chr15:76488844..76490782-chr15:76625306..76628294,2	K562	blood:
15	chr15:76527288..76528019-chr15:76626012..76626713,2	MCF-7	breast:
16	chr15:76482740..76483457-chr15:76626133..76626814,2	MCF-7	breast:
17	chr15:76483216..76483808-chr15:76625887..76626857,3	K562	blood:
18	chr15:76577359..76578026-chr15:76626000..76626679,2	MCF-7	breast:

Variant related genes	Relation type
ISL2	TF binding region
ENSG00000140374	Chromatin interaction
ENSG00000159556	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904399	chr15:76622903-76646575	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv827391	chr15:76626571-76636327	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76621000-76628000	Weak transcription	HSMMtube	muscle
2	chr15:76625600-76627000	Enhancers	K562	blood
3	chr15:76626000-76626800	Flanking Active TSS	A549	lung
4	chr15:76626000-76627000	Enhancers	Hela-S3	cervix
5	chr15:76626000-76627200	Flanking Active TSS	HepG2	liver
6	chr15:76626400-76626600	Bivalent/Poised TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr15:76626400-76626600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr15:76626400-76626600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
9	chr15:76626400-76626600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr15:76626400-76626600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
11	chr15:76626400-76626600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr15:76626400-76626600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr15:76626400-76626600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr15:76626400-76626600	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
15	chr15:76626400-76626800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
16	chr15:76626400-76626800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
17	chr15:76626400-76627400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr15:76626400-76627600	Strong transcription	Right Atrium	heart

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