The 2.0 version of rSNPBase

Variant report

Variant rs57546911
Chromosome Location chr12:49964601-49964602
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:117 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:49962600-49970200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
2 chr12:49962600-49971000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr12:49962800-49970800 Weak transcription Lung lung
4 chr12:49962800-49974200 Weak transcription Esophagus oesophagus
5 chr12:49962800-49974200 Weak transcription Placenta Placenta
6 chr12:49963000-49964800 Weak transcription Primary T killer memory cells from peripheral blood blood
7 chr12:49963000-49964800 Weak transcription Colon Smooth Muscle Colon
8 chr12:49963000-49965000 Enhancers Primary T helper cells PMA-I stimulated --
9 chr12:49963000-49965000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
10 chr12:49963000-49965200 Enhancers Skeletal Muscle Male skeletal muscle
11 chr12:49963000-49965400 Enhancers Primary T helper naive cells fromperipheralblood blood
12 chr12:49963000-49965800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
13 chr12:49963000-49967000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
14 chr12:49963000-49967600 Weak transcription iPS-20b Cell Line embryonic stem cell
15 chr12:49963000-49967800 Weak transcription HUES48 Cell Line embryonic stem cell
16 chr12:49963000-49968600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
17 chr12:49963000-49969600 Weak transcription NH-A brain
18 chr12:49963000-49970600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
19 chr12:49963000-49971600 Weak transcription Right Atrium heart
20 chr12:49963000-49974000 Weak transcription ES-I3 Cell Line embryonic stem cell
21 chr12:49963000-49974000 Weak transcription H1 Cell Line embryonic stem cell
22 chr12:49963000-49974000 Weak transcription iPS-15b Cell Line embryonic stem cell
23 chr12:49963000-49974000 Weak transcription Primary T helper naive cells from peripheral blood blood
24 chr12:49963000-49974000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
25 chr12:49963000-49974000 Weak transcription Brain Angular Gyrus brain
26 chr12:49963000-49974000 Weak transcription Brain Hippocampus Middle brain
27 chr12:49963000-49974000 Weak transcription Brain Substantia Nigra brain
28 chr12:49963000-49974000 Weak transcription HSMMtube muscle
29 chr12:49963000-49974200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
30 chr12:49963000-49974200 Weak transcription Brain Inferior Temporal Lobe brain
31 chr12:49963000-49974200 Weak transcription Duodenum Mucosa Duodenum
32 chr12:49963000-49974200 Weak transcription Fetal Kidney kidney
33 chr12:49963000-49974200 Weak transcription Fetal Lung lung
34 chr12:49963000-49974200 Weak transcription Rectal Smooth Muscle rectum
35 chr12:49963000-49979200 Weak transcription H9 Cell Line embryonic stem cell
36 chr12:49963000-49979200 Weak transcription Placenta Amnion Placenta Amnion
37 chr12:49963000-49982200 Weak transcription NHLF lung
38 chr12:49963000-49984800 Weak transcription Small Intestine intestine
39 chr12:49963000-50003200 Weak transcription Aorta Aorta
40 chr12:49963200-49964800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
41 chr12:49963200-49964800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
42 chr12:49963200-49965000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
43 chr12:49963200-49965000 Enhancers Stomach Smooth Muscle stomach
44 chr12:49963200-49965400 Enhancers Dnd41 blood
45 chr12:49963200-49967000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
46 chr12:49963200-49967000 Weak transcription HUES64 Cell Line embryonic stem cell
47 chr12:49963200-49967000 Weak transcription Fetal Heart heart
48 chr12:49963200-49967200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
49 chr12:49963200-49967200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
50 chr12:49963200-49967200 Weak transcription Rectal Mucosa Donor 29 rectum

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Last update: Aug 31, 2015