Variant report

Variant	rs57560125
Chromosome Location	chr3:82053061-82053062
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs17019544	1.00[EUR][1000 genomes]
rs1919568	1.00[EUR][1000 genomes]
rs57027601	1.00[EUR][1000 genomes]
rs57470806	1.00[EUR][1000 genomes]
rs57551871	1.00[EUR][1000 genomes]
rs57996908	1.00[EUR][1000 genomes]
rs58087753	1.00[EUR][1000 genomes]
rs58504250	1.00[EUR][1000 genomes]
rs59631704	1.00[EUR][1000 genomes]
rs60957164	1.00[EUR][1000 genomes]
rs61484580	1.00[EUR][1000 genomes]
rs72895828	1.00[EUR][1000 genomes]
rs72895832	1.00[EUR][1000 genomes]
rs72895840	1.00[EUR][1000 genomes]
rs72895845	1.00[EUR][1000 genomes]
rs72895859	1.00[EUR][1000 genomes]
rs72897629	1.00[EUR][1000 genomes]
rs72897645	1.00[EUR][1000 genomes]
rs72897657	1.00[EUR][1000 genomes]
rs72897666	1.00[EUR][1000 genomes]
rs72897671	1.00[EUR][1000 genomes]
rs72897675	1.00[EUR][1000 genomes]
rs72897678	1.00[EUR][1000 genomes]
rs72897679	1.00[EUR][1000 genomes]
rs72897682	1.00[EUR][1000 genomes]
rs72897684	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72897700	1.00[EUR][1000 genomes]
rs72899612	1.00[EUR][1000 genomes]
rs72899615	1.00[EUR][1000 genomes]
rs72899621	1.00[EUR][1000 genomes]
rs72899624	1.00[EUR][1000 genomes]
rs72899627	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72899632	1.00[EUR][1000 genomes]
rs72899652	1.00[EUR][1000 genomes]
rs72899670	1.00[EUR][1000 genomes]
rs72901640	1.00[EUR][1000 genomes]
rs72901647	1.00[EUR][1000 genomes]
rs72901650	1.00[EUR][1000 genomes]
rs72901652	1.00[EUR][1000 genomes]
rs72901659	1.00[EUR][1000 genomes]
rs72912148	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73855821	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007167	chr3:82050178-82301466	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82046200-82053800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr3:82049400-82055000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr3:82049600-82055000	Enhancers	Fetal Brain Male	brain
4	chr3:82049800-82055000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr3:82050000-82053400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr3:82050000-82054600	Enhancers	Fetal Brain Female	brain
7	chr3:82050400-82053400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr3:82050600-82054600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr3:82051400-82054800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:82052800-82054000	Weak transcription	Brain Germinal Matrix	brain
11	chr3:82052800-82054800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:82053000-82053400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr3:82053000-82053400	Weak transcription	Brain Angular Gyrus	brain
14	chr3:82053000-82053600	Weak transcription	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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