Variant report

Variant	rs575690653
Chromosome Location	chr3:162086236-162086237
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:162084506..162087458-chr3:162087812..162089576,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460919	chr3:161799090-162094430	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv592144	chr3:161799090-162094430	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv877721	chr3:161878713-162303276	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1006802	chr3:161921063-162599175	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv877724	chr3:162022959-162198135	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv877725	chr3:162036879-162216666	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1008920	chr3:162037850-162123354	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1002279	chr3:162061779-162156743	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv877726	chr3:162085820-162155076	Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv877727	chr3:162085820-162198135	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv877728	chr3:162085820-162236885	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:162082800-162088400	Enhancers	Fetal Heart	heart
2	chr3:162083200-162086400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr3:162083200-162087800	Enhancers	Fetal Stomach	stomach
4	chr3:162083600-162086600	Enhancers	Fetal Lung	lung
5	chr3:162083800-162086400	Enhancers	Fetal Kidney	kidney
6	chr3:162084000-162087400	Enhancers	Rectal Smooth Muscle	rectum
7	chr3:162084400-162087000	Enhancers	Colon Smooth Muscle	Colon
8	chr3:162085000-162087200	Weak transcription	Dnd41	blood
9	chr3:162085200-162086400	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr3:162085400-162086400	Enhancers	Placenta Amnion	Placenta Amnion
11	chr3:162085400-162086400	Enhancers	Psoas Muscle	Psoas
12	chr3:162085600-162086400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr3:162085600-162086400	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr3:162085600-162086400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr3:162085600-162086400	Enhancers	Brain Germinal Matrix	brain
16	chr3:162085600-162087400	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr3:162085800-162086400	Enhancers	Fetal Muscle Leg	muscle
18	chr3:162085800-162086400	Enhancers	Small Intestine	intestine
19	chr3:162086000-162086400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr3:162086000-162086400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr3:162086000-162086600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr3:162086000-162087000	Weak transcription	Stomach Smooth Muscle	stomach
23	chr3:162086000-162087200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr3:162086000-162088400	Enhancers	Fetal Brain Male	brain
25	chr3:162086200-162086400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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