Variant report

Variant	rs57581390
Chromosome Location	chr5:118230671-118230672
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10519564	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11949851	0.84[AFR][1000 genomes]
rs11954152	0.84[ASN][1000 genomes]
rs12109156	0.89[ASN][1000 genomes]
rs1510970	0.82[ASN][1000 genomes]
rs1510971	0.82[ASN][1000 genomes]
rs17132677	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17144806	0.86[AFR][1000 genomes]
rs17144824	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17144836	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2377127	0.89[ASN][1000 genomes]
rs34045550	0.89[ASN][1000 genomes]
rs4634381	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4895183	0.81[AFR][1000 genomes]
rs55671162	0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs56191796	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56406364	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59241413	0.80[ASN][1000 genomes]
rs6860946	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6863802	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs6874109	0.90[AFR][1000 genomes]
rs6874399	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6880144	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6892437	0.96[ASN][1000 genomes]
rs73239055	0.80[ASN][1000 genomes]
rs73239065	0.95[EUR][1000 genomes]
rs73792419	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs767935	0.85[ASN][1000 genomes]
rs7734815	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7737388	0.82[ASN][1000 genomes]
rs7737716	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882767	chr5:117931730-118385691	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv882773	chr5:118175640-118241854	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv599563	chr5:118191798-118241854	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118216600-118244800	Weak transcription	Primary T cells from cord blood	blood
2	chr5:118218800-118240600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr5:118225000-118247000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:118225400-118300400	Weak transcription	Primary B cells from cord blood	blood
5	chr5:118227400-118231400	Weak transcription	Brain Hippocampus Middle	brain
6	chr5:118227400-118270600	Weak transcription	Ovary	ovary
7	chr5:118229200-118231600	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr5:118229400-118231200	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr5:118229600-118231400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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