Variant report

Variant	rs57583107
Chromosome Location	chr1:172903542-172903543
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172882184..172884117-chr1:172901661..172903834,2	MCF-7	breast:
2	chr1:172501051..172503562-chr1:172903363..172904892,2	K562	blood:

Variant related genes	Relation type
ENSG00000094975	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11799419	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11808521	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12060919	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12063352	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12063378	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12065966	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12070646	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12077150	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12085777	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16845072	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16845082	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16845125	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1811833	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28394470	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28803204	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28803577	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28865614	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56385939	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57440247	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58489932	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60905087	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs983514	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172900600-172906000	Enhancers	HUVEC	blood vessel
2	chr1:172900800-172904200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr1:172900800-172904200	Enhancers	Dnd41	blood
4	chr1:172900800-172904200	Enhancers	NHLF	lung
5	chr1:172900800-172904800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:172900800-172905000	Enhancers	Muscle Satellite Cultured Cells	--
7	chr1:172901200-172903800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr1:172901400-172904000	Enhancers	HepG2	liver
9	chr1:172901400-172904200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:172901600-172905200	Weak transcription	Spleen	Spleen
11	chr1:172901800-172903800	Enhancers	Placenta	Placenta
12	chr1:172901800-172904000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr1:172901800-172904200	Enhancers	Osteobl	bone
14	chr1:172901800-172904400	Enhancers	NHEK	skin
15	chr1:172901800-172904600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr1:172901800-172904600	Enhancers	HMEC	breast
17	chr1:172902000-172904000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr1:172902200-172903600	Enhancers	Stomach Mucosa	stomach
19	chr1:172902200-172904200	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr1:172902200-172904800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr1:172902400-172903600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr1:172902400-172904200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr1:172902600-172908800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr1:172902800-172903800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr1:172902800-172904200	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr1:172902800-172908800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr1:172903000-172903600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr1:172903000-172903600	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr1:172903000-172903600	Enhancers	Primary T cells fromperipheralblood	blood
30	chr1:172903000-172903600	Enhancers	Primary T helper cells fromperipheralblood	blood
31	chr1:172903000-172903600	Enhancers	Adipose Nuclei	Adipose
32	chr1:172903000-172903600	Enhancers	Aorta	Aorta
33	chr1:172903000-172903600	Enhancers	Esophagus	oesophagus
34	chr1:172903000-172903600	Flanking Active TSS	Hela-S3	cervix
35	chr1:172903000-172903800	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr1:172903000-172903800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr1:172903000-172903800	Enhancers	Primary T helper cells PMA-I stimulated	--
38	chr1:172903000-172903800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
39	chr1:172903000-172903800	Enhancers	Duodenum Mucosa	Duodenum
40	chr1:172903000-172903800	Enhancers	Fetal Stomach	stomach
41	chr1:172903000-172903800	Enhancers	Fetal Thymus	thymus
42	chr1:172903000-172903800	Enhancers	Psoas Muscle	Psoas
43	chr1:172903000-172903800	Enhancers	Stomach Smooth Muscle	stomach
44	chr1:172903000-172904000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
45	chr1:172903000-172904000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
46	chr1:172903000-172904600	Enhancers	Monocytes-CD14+_RO01746	blood
47	chr1:172903200-172903600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr1:172903200-172903600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr1:172903200-172903800	Flanking Active TSS	NHDF-Ad	bronchial
50	chr1:172903200-172904000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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