Variant report

Variant	rs575833641
Chromosome Location	chr3:67546338-67546339
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007093	chr3:67113534-67602973	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv470638	chr3:67367341-67814738	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv460700	chr3:67393629-67712970	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv590560	chr3:67393629-67712970	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv834719	chr3:67396626-67589852	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv1012416	chr3:67546244-67615531	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:67488400-67566400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr3:67500800-67567000	Weak transcription	Pancreas	Pancrea
3	chr3:67504000-67559800	Weak transcription	Esophagus	oesophagus
4	chr3:67508200-67577600	Weak transcription	Spleen	Spleen
5	chr3:67511600-67560000	Weak transcription	Lung	lung
6	chr3:67511800-67565000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr3:67512800-67554800	Weak transcription	Fetal Muscle Leg	muscle
8	chr3:67513200-67564800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr3:67513400-67567800	Weak transcription	NHLF	lung
10	chr3:67513600-67559800	Weak transcription	NHDF-Ad	bronchial
11	chr3:67514600-67559800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr3:67519800-67557400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr3:67520800-67559800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr3:67521600-67580400	Weak transcription	Stomach Mucosa	stomach
15	chr3:67524200-67567000	Weak transcription	Placenta	Placenta
16	chr3:67526800-67583200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr3:67528200-67564400	Weak transcription	Fetal Lung	lung
18	chr3:67528200-67564800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr3:67529000-67559200	Weak transcription	GM12878-XiMat	blood
20	chr3:67530200-67560200	Weak transcription	NHEK	skin
21	chr3:67530800-67548200	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr3:67531400-67576200	Weak transcription	HMEC	breast
23	chr3:67533200-67577000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr3:67533400-67577600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr3:67534400-67576400	Weak transcription	Aorta	Aorta
26	chr3:67534600-67560000	Weak transcription	Right Ventricle	heart
27	chr3:67534600-67566200	Weak transcription	Gastric	stomach
28	chr3:67534800-67554200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr3:67534800-67554800	Weak transcription	Left Ventricle	heart
30	chr3:67534800-67560200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr3:67534800-67566200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr3:67535000-67578800	Weak transcription	Brain Hippocampus Middle	brain
33	chr3:67537400-67559800	Weak transcription	Ovary	ovary
34	chr3:67537400-67579600	Weak transcription	Small Intestine	intestine
35	chr3:67537600-67560200	Weak transcription	HSMMtube	muscle
36	chr3:67537600-67566800	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr3:67539200-67549800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr3:67540400-67547200	Strong transcription	Primary B cells from cord blood	blood
39	chr3:67540800-67564400	Weak transcription	Fetal Kidney	kidney
40	chr3:67541000-67546400	Weak transcription	HUVEC	blood vessel
41	chr3:67541000-67546800	Weak transcription	Colon Smooth Muscle	Colon
42	chr3:67541200-67547000	Strong transcription	Rectal Mucosa Donor 29	rectum
43	chr3:67541400-67550000	Strong transcription	Primary T helper cells fromperipheralblood	blood
44	chr3:67541400-67582000	Weak transcription	Rectal Smooth Muscle	rectum
45	chr3:67542200-67548400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr3:67542200-67559000	Strong transcription	Primary T cells from cord blood	blood
47	chr3:67542400-67548600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr3:67542400-67564800	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr3:67542400-67566400	Weak transcription	NH-A	brain
50	chr3:67542600-67549400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links