Variant report

Variant	rs57587608
Chromosome Location	chr4:147888347-147888348
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:147888276..147890425-chr4:147892906..147895902,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000248346	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10519821	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10519826	0.97[EUR][1000 genomes]
rs10519850	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12500369	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12501143	0.93[EUR][1000 genomes]
rs12501290	0.93[EUR][1000 genomes]
rs12501579	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12502103	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12505022	0.90[EUR][1000 genomes]
rs12508180	0.93[EUR][1000 genomes]
rs12508751	0.90[EUR][1000 genomes]
rs12511968	0.97[EUR][1000 genomes]
rs12512057	0.97[EUR][1000 genomes]
rs12512976	1.00[EUR][1000 genomes]
rs1370303	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17021947	0.97[EUR][1000 genomes]
rs17021951	0.97[EUR][1000 genomes]
rs17021983	0.97[EUR][1000 genomes]
rs17021984	0.97[EUR][1000 genomes]
rs17022031	0.97[EUR][1000 genomes]
rs17609789	0.97[EUR][1000 genomes]
rs17609810	0.97[EUR][1000 genomes]
rs17609942	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17609956	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17656106	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17656888	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17656944	1.00[EUR][1000 genomes]
rs17656983	0.93[EUR][1000 genomes]
rs17657124	0.93[EUR][1000 genomes]
rs2043704	0.85[AMR][1000 genomes]
rs35085760	0.97[EUR][1000 genomes]
rs3810845	0.85[AMR][1000 genomes]
rs41280531	0.97[EUR][1000 genomes]
rs4835054	0.97[EUR][1000 genomes]
rs4835344	0.97[EUR][1000 genomes]
rs4835345	0.97[EUR][1000 genomes]
rs4835347	0.97[EUR][1000 genomes]
rs4835350	0.97[EUR][1000 genomes]
rs4835351	0.97[EUR][1000 genomes]
rs4835353	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57054230	0.97[EUR][1000 genomes]
rs6814899	0.97[EUR][1000 genomes]
rs6819665	0.97[EUR][1000 genomes]
rs6830880	0.97[EUR][1000 genomes]
rs6832643	0.97[EUR][1000 genomes]
rs6836696	0.97[EUR][1000 genomes]
rs6846438	0.97[EUR][1000 genomes]
rs6857108	0.97[EUR][1000 genomes]
rs72943815	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1826357	chr4:147876484-147900981	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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