Variant report

Variant	rs575909002
Chromosome Location	chr3:119498336-119498337
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011178	chr3:119437192-119589116	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv536703	chr3:119437192-119589116	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv237513	chr3:119496924-119498671	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119494000-119498400	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr3:119496800-119499400	Enhancers	HSMM	muscle
3	chr3:119497000-119499400	Enhancers	Muscle Satellite Cultured Cells	--
4	chr3:119497800-119499200	Enhancers	HSMMtube	muscle
5	chr3:119497800-119499200	Enhancers	K562	blood
6	chr3:119497800-119503000	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr3:119498000-119499400	Enhancers	Fetal Muscle Leg	muscle
8	chr3:119498000-119499600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr3:119498000-119499600	Enhancers	GM12878-XiMat	blood
10	chr3:119498200-119501000	Enhancers	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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