Variant report

Variant	rs575934009
Chromosome Location	chr7:101382961-101382962
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:101376217..101377768-chr7:101381798..101384550,2	MCF-7	breast:
2	chr7:101371362..101372936-chr7:101382706..101384319,2	MCF-7	breast:
3	chr7:101376174..101379277-chr7:101381131..101384556,3	MCF-7	breast:
4	chr7:101381251..101383243-chr7:101457582..101460457,4	MCF-7	breast:
5	chr7:101381459..101384895-chr7:101386139..101388176,3	K562	blood:

Variant related genes	Relation type
ENSG00000257923	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933653	chr7:100701931-101515782	Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv1018544	chr7:101225639-101424889	Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv539045	chr7:101225639-101424889	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv482758	chr7:101231458-101395219	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv831079	chr7:101273495-101466776	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
6	nsv1021797	chr7:101342353-101466957	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
7	nsv539046	chr7:101342353-101466957	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
8	nsv1024319	chr7:101368299-101668159	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
9	nsv539047	chr7:101368299-101668159	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
10	esv2534796	chr7:101381535-101384376	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	esv3477438	chr7:101382413-101383963	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	esv3477437	chr7:101382450-101384103	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101377200-101383000	Weak transcription	Primary B cells from peripheral blood	blood
2	chr7:101377200-101386600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:101377400-101384200	Weak transcription	Colonic Mucosa	Colon
4	chr7:101378000-101383000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr7:101378000-101383000	Weak transcription	Placenta	Placenta
6	chr7:101381000-101383000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr7:101381000-101384200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr7:101381200-101384200	Enhancers	Fetal Thymus	thymus
9	chr7:101382200-101384000	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr7:101382400-101383400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr7:101382400-101383400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr7:101382400-101384200	Enhancers	Thymus	Thymus
13	chr7:101382400-101384200	Enhancers	GM12878-XiMat	blood
14	chr7:101382600-101383200	Enhancers	H1 Cell Line	embryonic stem cell
15	chr7:101382600-101383200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr7:101382600-101383200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr7:101382600-101383200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
18	chr7:101382600-101383400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr7:101382600-101383400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
20	chr7:101382600-101383400	Enhancers	Pancreas	Pancrea
21	chr7:101382600-101383600	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr7:101382600-101383600	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr7:101382600-101383600	Enhancers	HepG2	liver
24	chr7:101382600-101383600	Enhancers	K562	blood
25	chr7:101382600-101383800	Enhancers	Hela-S3	cervix
26	chr7:101382600-101384000	Enhancers	Dnd41	blood
27	chr7:101382600-101384200	Enhancers	Primary neutrophils fromperipheralblood	blood
28	chr7:101382600-101384200	Enhancers	Primary B cells from cord blood	blood
29	chr7:101382600-101384400	Enhancers	Primary hematopoietic stem cells	blood
30	chr7:101382800-101383200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
31	chr7:101382800-101383200	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr7:101382800-101383200	Enhancers	HUVEC	blood vessel
33	chr7:101382800-101383400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr7:101382800-101383400	Enhancers	Sigmoid Colon	Sigmoid Colon
35	chr7:101382800-101383400	Enhancers	A549	lung
36	chr7:101382800-101383400	Enhancers	HSMM	muscle
37	chr7:101382800-101383600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
38	chr7:101382800-101384200	Enhancers	Monocytes-CD14+_RO01746	blood
39	chr7:101382800-101385000	Enhancers	Stomach Mucosa	stomach
40	chr7:101382800-101386600	Enhancers	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links