Variant report

Variant	rs575998550
Chromosome Location	chr15:76630847-76630848
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:76601310..76610583-chr15:76618699..76634643,40	K562	blood:
2	chr15:76628671..76632944-chr15:76633969..76642252,10	MCF-7	breast:
3	chr15:76602419..76607116-chr15:76626572..76631104,6	MCF-7	breast:
4	chr15:76574110..76576498-chr15:76629872..76632197,2	K562	blood:
5	chr15:76601574..76614388-chr15:76623703..76634730,38	K562	blood:
6	chr15:76627980..76632315-chr15:76633215..76636196,5	MCF-7	breast:
7	chr15:76482689..76486583-chr15:76628039..76631365,3	K562	blood:
8	chr15:76630323..76632934-chr15:77355490..77357171,2	K562	blood:
9	chr15:76630618..76633246-chr15:76671829..76673785,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000270036	Chromatin interaction
ENSG00000259514	Chromatin interaction
ENSG00000169758	Chromatin interaction
ENSG00000140374	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904399	chr15:76622903-76646575	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv827391	chr15:76626571-76636327	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv3398970	chr15:76629522-76632070	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76627400-76635400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chr15:76627600-76631000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chr15:76627600-76631000	Bivalent Enhancer	Fetal Brain Male	brain
4	chr15:76627600-76631200	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr15:76627600-76632400	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
6	chr15:76627600-76634400	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
7	chr15:76628000-76631800	Bivalent/Poised TSS	Fetal Stomach	stomach
8	chr15:76628000-76632000	Bivalent/Poised TSS	Fetal Intestine Small	intestine
9	chr15:76628200-76631200	Active TSS	HSMM	muscle
10	chr15:76628800-76631200	Bivalent Enhancer	Fetal Heart	heart
11	chr15:76628800-76631200	Bivalent Enhancer	Fetal Lung	lung
12	chr15:76628800-76631200	Bivalent Enhancer	Lung	lung
13	chr15:76629000-76631000	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
14	chr15:76629000-76633600	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
15	chr15:76629200-76631200	Bivalent Enhancer	Fetal Muscle Leg	muscle
16	chr15:76629200-76631400	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr15:76629200-76632200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
18	chr15:76629200-76632200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
19	chr15:76629200-76632600	Bivalent Enhancer	Fetal Thymus	thymus
20	chr15:76629400-76631000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
21	chr15:76629400-76631000	Bivalent Enhancer	Brain Anterior Caudate	brain
22	chr15:76629400-76631200	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr15:76629400-76631200	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 31	rectum
24	chr15:76629400-76632000	Bivalent Enhancer	Primary B cells from peripheral blood	blood
25	chr15:76629400-76633400	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
26	chr15:76629600-76631200	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
27	chr15:76629600-76631400	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 29	rectum
28	chr15:76629600-76631400	Flanking Bivalent TSS/Enh	GM12878-XiMat	blood
29	chr15:76629600-76632000	Bivalent Enhancer	Spleen	Spleen
30	chr15:76629600-76632200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
31	chr15:76629800-76631000	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
32	chr15:76629800-76631200	Flanking Bivalent TSS/Enh	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr15:76629800-76631800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
34	chr15:76629800-76632800	Bivalent Enhancer	Stomach Mucosa	stomach
35	chr15:76630000-76631000	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
36	chr15:76630000-76631000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
37	chr15:76630000-76631000	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr15:76630000-76631000	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr15:76630000-76631000	Bivalent Enhancer	Ovary	ovary
40	chr15:76630000-76631000	Flanking Active TSS	Right Ventricle	heart
41	chr15:76630000-76631200	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
42	chr15:76630000-76632200	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
43	chr15:76630200-76631000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
44	chr15:76630200-76631000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
45	chr15:76630200-76631000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
46	chr15:76630200-76631000	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
47	chr15:76630200-76631000	Bivalent Enhancer	Brain Dorsolateral Prefrontal Cortex	brain
48	chr15:76630200-76631000	Active TSS	Stomach Smooth Muscle	stomach
49	chr15:76630200-76631000	Active TSS	HepG2	liver
50	chr15:76630200-76631400	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung

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