Variant report
| Variant | rs57622309 |
|---|---|
| Chromosome Location | chr13:51215620-51215621 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:50696839..50701708-chr13:51215562..51219083,4 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000231607 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs55735210 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56071165 | 1.00[EUR][1000 genomes] |
| rs59628841 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60219042 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73487899 | 1.00[EUR][1000 genomes] |
| rs73490019 | 1.00[EUR][1000 genomes] |
| rs7992787 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7995277 | 1.00[EUR][1000 genomes] |
| rs7996975 | 1.00[EUR][1000 genomes] |
| rs9591342 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9591344 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9596316 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9596318 | 1.00[ASN][1000 genomes] |
| rs9596323 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2753964 | chr13:50545399-51421199 | Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 1256 gene(s) | inside rSNPs | diseases |
| 2 | esv2753492 | chr13:50550081-51461720 | Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 1256 gene(s) | inside rSNPs | diseases |
| 3 | esv2753864 | chr13:51136699-51375199 | Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv1045733 | chr13:51187575-51217464 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:51210800-51223800 | Weak transcription | Fetal Thymus | thymus |
