Variant report

Variant	rs576223154
Chromosome Location	chr4:56890374-56890375
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:56883287..56885527-chr4:56888797..56891128,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755990	chr4:56317136-57143037	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv1005845	chr4:56522075-56980357	Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv427681	chr4:56651921-56908209	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	esv3378487	chr4:56888720-56891568	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3394170	chr4:56888945-56891293	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3371860	chr4:56889445-56891043	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56816400-56890800	Weak transcription	Colon Smooth Muscle	Colon
2	chr4:56816600-56890600	Weak transcription	Brain Hippocampus Middle	brain
3	chr4:56816600-56896400	Weak transcription	Fetal Heart	heart
4	chr4:56819000-56897400	Weak transcription	HSMMtube	muscle
5	chr4:56819200-56890600	Weak transcription	NHLF	lung
6	chr4:56820600-56892400	Weak transcription	Hela-S3	cervix
7	chr4:56823600-56893800	Weak transcription	HMEC	breast
8	chr4:56829600-56890600	Weak transcription	A549	lung
9	chr4:56835400-56904800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr4:56837200-56905000	Weak transcription	Brain Substantia Nigra	brain
11	chr4:56839800-56896600	Weak transcription	Brain Angular Gyrus	brain
12	chr4:56842800-56890800	Weak transcription	Osteobl	bone
13	chr4:56844200-56891000	Weak transcription	Colonic Mucosa	Colon
14	chr4:56847200-56891000	Weak transcription	Right Ventricle	heart
15	chr4:56852600-56890600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr4:56856200-56892600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr4:56857600-56897400	Strong transcription	Fetal Thymus	thymus
18	chr4:56857600-56898200	Strong transcription	Dnd41	blood
19	chr4:56857600-56898200	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr4:56863200-56892600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr4:56864600-56894200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr4:56864800-56892200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr4:56865400-56894400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr4:56866200-56895000	Weak transcription	Lung	lung
25	chr4:56866800-56890600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr4:56866800-56890600	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr4:56866800-56891000	Weak transcription	Esophagus	oesophagus
28	chr4:56866800-56896000	Weak transcription	Small Intestine	intestine
29	chr4:56867000-56895000	Weak transcription	Psoas Muscle	Psoas
30	chr4:56867200-56892200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr4:56869000-56891200	Weak transcription	Fetal Brain Male	brain
32	chr4:56872200-56893200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr4:56872200-56904800	Weak transcription	HepG2	liver
34	chr4:56873400-56897000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr4:56874800-56890600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr4:56876600-56895400	Weak transcription	Brain Anterior Caudate	brain
37	chr4:56879000-56892800	Weak transcription	NHEK	skin
38	chr4:56879200-56890600	Weak transcription	Stomach Smooth Muscle	stomach
39	chr4:56879200-56893400	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr4:56880000-56897400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr4:56880200-56890600	Weak transcription	K562	blood
42	chr4:56880400-56897200	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr4:56880600-56898200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr4:56881800-56890600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr4:56883600-56897200	Strong transcription	Primary T helper cells PMA-I stimulated	--
46	chr4:56883800-56893400	Strong transcription	Primary hematopoietic stem cells	blood
47	chr4:56883800-56895800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
48	chr4:56883800-56897000	Strong transcription	Adipose Nuclei	Adipose
49	chr4:56883800-56897600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr4:56884400-56890600	Weak transcription	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links