Variant report

Variant	rs576328108
Chromosome Location	chr6:150464652-150464653
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150464023..150466191-chr6:150484823..150488710,3	K562	blood:
2	chr17:78233901..78236190-chr6:150464382..150465882,2	MCF-7	breast:
3	chr6:150401453..150402381-chr6:150464218..150464794,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000238594	Chromatin interaction
ENSG00000173821	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886770	chr6:150395424-150499889	Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1026690	chr6:150419115-150485583	Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv3365555	chr6:150463284-150466132	Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150463000-150465400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr6:150463200-150464800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
3	chr6:150463200-150464800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr6:150463200-150465000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
5	chr6:150463200-150465000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
6	chr6:150463200-150465000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:150463200-150465000	Bivalent/Poised TSS	A549	lung
8	chr6:150463200-150465200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
9	chr6:150463200-150465200	Bivalent Enhancer	Spleen	Spleen
10	chr6:150463200-150465400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
11	chr6:150463200-150465400	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
12	chr6:150463200-150465600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:150463200-150466600	Active TSS	Pancreatic Islets	Pancreatic Islet
14	chr6:150463400-150464800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
15	chr6:150463400-150464800	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
16	chr6:150463400-150465000	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
17	chr6:150463400-150465000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:150463400-150465000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr6:150463400-150465000	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
20	chr6:150463400-150465000	Active TSS	Fetal Kidney	kidney
21	chr6:150463400-150465200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr6:150463400-150465200	Bivalent/Poised TSS	Brain Germinal Matrix	brain
23	chr6:150463400-150465400	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr6:150463400-150465400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
25	chr6:150463400-150465400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr6:150463400-150465600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr6:150463400-150465600	Active TSS	Psoas Muscle	Psoas
28	chr6:150463400-150465800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
29	chr6:150463600-150464800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:150463600-150464800	Active TSS	Fetal Brain Female	brain
31	chr6:150463600-150464800	Active TSS	Left Ventricle	heart
32	chr6:150463600-150465000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
33	chr6:150463600-150465000	Active TSS	Breast Myoepithelial Primary Cells	Breast
34	chr6:150463600-150465000	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
35	chr6:150463600-150465000	Active TSS	Brain Inferior Temporal Lobe	brain
36	chr6:150463600-150465000	Active TSS	Rectal Smooth Muscle	rectum
37	chr6:150463600-150465200	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
38	chr6:150463600-150465200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
39	chr6:150463600-150465200	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr6:150463600-150465200	Active TSS	Brain Angular Gyrus	brain
41	chr6:150463600-150465200	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
42	chr6:150463600-150465400	Active TSS	NHEK	skin
43	chr6:150463600-150465600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
44	chr6:150463600-150465600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr6:150463600-150466000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr6:150463600-150466400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr6:150463600-150466600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr6:150463600-150467200	Active TSS	Right Atrium	heart
49	chr6:150463800-150464800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr6:150463800-150464800	Weak transcription	Fetal Heart	heart

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