Variant report

Variant	rs576353468
Chromosome Location	chr6:128828398-128828399
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:128827840..128829694-chr6:128832240..128833795,2	MCF-7	breast:
2	chr6:128817873..128822661-chr6:128826854..128830658,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000224733	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033443	chr6:128306654-128899203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv538440	chr6:128306654-128899203	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1020071	chr6:128579774-129048919	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv538441	chr6:128579774-129048919	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv830800	chr6:128710631-128878435	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv3503365	chr6:128826884-128830707	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv11105	chr6:128827511-128829555	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv604653	chr6:128827591-128829399	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv604654	chr6:128827591-128829444	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv3503361	chr6:128827668-128829711	Flanking Active TSS Weak transcription Genic enhancers Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv3474260	chr6:128827680-128829691	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv3503364	chr6:128827719-128829639	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv3503362	chr6:128827725-128829632	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv3503366	chr6:128827774-128829592	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	esv3474261	chr6:128827778-128829590	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	esv3503367	chr6:128827778-128829590	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv604655	chr6:128827962-128829198	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	nsv604656	chr6:128827962-128829399	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	nsv604657	chr6:128827962-128829444	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	nsv604658	chr6:128828070-128829444	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
21	nsv604659	chr6:128828199-128829444	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
22	nsv516115	chr6:128828268-128829096	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
23	nsv604660	chr6:128828268-128829444	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128808800-128830800	Weak transcription	Lung	lung
2	chr6:128813000-128828600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:128815200-128833800	Enhancers	Fetal Intestine Large	intestine
4	chr6:128817200-128828600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:128817200-128839800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:128817200-128839800	Weak transcription	Aorta	Aorta
7	chr6:128819800-128828600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr6:128819800-128828600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr6:128820600-128833800	Enhancers	Fetal Intestine Small	intestine
10	chr6:128820800-128828400	Weak transcription	HSMMtube	muscle
11	chr6:128820800-128828600	Weak transcription	HSMM	muscle
12	chr6:128821600-128836800	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr6:128822000-128828600	Weak transcription	Colonic Mucosa	Colon
14	chr6:128822200-128828600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr6:128822200-128828600	Weak transcription	Gastric	stomach
16	chr6:128822400-128828600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:128823400-128832800	Enhancers	Stomach Mucosa	stomach
18	chr6:128824400-128828600	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr6:128824800-128829400	Enhancers	Fetal Heart	heart
20	chr6:128825000-128829400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:128825400-128828600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:128825600-128828600	Enhancers	Muscle Satellite Cultured Cells	--
23	chr6:128825800-128828600	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr6:128825800-128828600	Weak transcription	Small Intestine	intestine
25	chr6:128825800-128829800	Enhancers	Brain Hippocampus Middle	brain
26	chr6:128825800-128831200	Weak transcription	Psoas Muscle	Psoas
27	chr6:128825800-128832400	Weak transcription	Fetal Kidney	kidney
28	chr6:128825800-128840000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr6:128826000-128828600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr6:128826000-128828600	Weak transcription	Ovary	ovary
31	chr6:128826000-128828600	Weak transcription	Pancreas	Pancrea
32	chr6:128826000-128828600	Weak transcription	NH-A	brain
33	chr6:128826000-128830800	Weak transcription	Right Ventricle	heart
34	chr6:128826200-128828600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:128826200-128828600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr6:128826400-128828600	Weak transcription	Right Atrium	heart
37	chr6:128826600-128829200	Enhancers	Brain Angular Gyrus	brain
38	chr6:128826800-128828600	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr6:128826800-128828600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr6:128826800-128829200	Enhancers	Fetal Lung	lung
41	chr6:128826800-128831000	Weak transcription	Left Ventricle	heart
42	chr6:128827000-128828600	Enhancers	Liver	Liver
43	chr6:128827000-128828600	Enhancers	Duodenum Mucosa	Duodenum
44	chr6:128827200-128828400	Weak transcription	HUVEC	blood vessel
45	chr6:128827200-128828600	Enhancers	Brain Cingulate Gyrus	brain
46	chr6:128827200-128828600	Weak transcription	Fetal Stomach	stomach
47	chr6:128827200-128828600	Weak transcription	Rectal Smooth Muscle	rectum
48	chr6:128827200-128828600	Enhancers	A549	lung
49	chr6:128827200-128829800	Enhancers	HUES48 Cell Line	embryonic stem cell
50	chr6:128827400-128828400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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