Variant report

Variant	rs576400066
Chromosome Location	chr10:119134474-119134475
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:119134020-119136098	GM19099	blood:	n/a	n/a
2	SIN3AK20	chr10:119133965-119135620	PANC-1	pancreas:	n/a	n/a
3	POLR2A	chr10:119133499-119135934	GM12892	blood:	n/a	n/a
4	POLR2A	chr10:119133686-119136261	K562	blood:	n/a	n/a
5	POLR2A	chr10:119134450-119135713	ProgFib	skin:	n/a	n/a
6	POLR2A	chr10:119134425-119135686	PFSK-1	brain:	n/a	n/a
7	YY1	chr10:119134427-119135645	K562	blood:	n/a	chr10:119134812-119134822 chr10:119134970-119134984 chr10:119134952-119134966 chr10:119135150-119135164 chr10:119134952-119134961 chr10:119135294-119135305 chr10:119134812-119134834 chr10:119134955-119134969 chr10:119135151-119135165 chr10:119134959-119134970
8	POLR2A	chr10:119133449-119135760	H1-neurons	neurons:	n/a	n/a
9	MXI1	chr10:119133137-119136276	SK-N-SH	brain:	n/a	chr10:119135168-119135177 chr10:119135168-119135177 chr10:119135166-119135175
10	POLR2A	chr10:119132277-119136195	MCF10A-Er-Src	breast:	n/a	n/a
11	UBTF	chr10:119133421-119135630	K562	blood:	n/a	n/a
12	HMGN3	chr10:119133676-119136423	K562	blood:	n/a	n/a
13	ZBTB7A	chr10:119134370-119134571	HepG2	liver:	n/a	n/a
14	POLR2A	chr10:119133445-119135968	GM19193	blood:	n/a	n/a
15	SIN3A	chr10:119133323-119136257	H1-hESC	embryonic stem cell:	n/a	chr10:119135168-119135177 chr10:119133735-119133745 chr10:119135427-119135441 chr10:119133731-119133744 chr10:119135246-119135257
16	POLR2A	chr10:119133595-119136099	GM18526	blood:	n/a	n/a
17	POLR2A	chr10:119134241-119136283	K562	blood:	n/a	n/a
18	ELF1	chr10:119133574-119135657	GM12878	blood:	n/a	chr10:119134953-119134965 chr10:119135642-119135653 chr10:119134958-119134967 chr10:119135042-119135051 chr10:119134965-119134977 chr10:119134952-119134961
19	E2F6	chr10:119133690-119136346	K562	blood:	n/a	chr10:119135248-119135257 chr10:119135585-119135599 chr10:119135018-119135027 chr10:119135156-119135165 chr10:119134956-119134966 chr10:119134831-119134841 chr10:119134953-119134963 chr10:119135020-119135029
20	TEAD4	chr10:119134328-119135761	SK-N-SH	brain:	n/a	n/a
21	POLR2A	chr10:119133696-119136148	GM18951	blood:	n/a	n/a
22	REST	chr10:119134273-119135039	ECC-1	luminal epithelium:	n/a	chr10:119134962-119134975
23	POLR2A	chr10:119133301-119136283	HL-60	blood:	n/a	n/a
24	YY1	chr10:119134210-119135839	ECC-1	luminal epithelium:	n/a	chr10:119134812-119134822 chr10:119134970-119134984 chr10:119134952-119134966 chr10:119135150-119135164 chr10:119134952-119134961 chr10:119135294-119135305 chr10:119134812-119134834 chr10:119134955-119134969 chr10:119135151-119135165 chr10:119134959-119134970
25	YY1	chr10:119133952-119135596	K562	blood:	n/a	chr10:119134812-119134822 chr10:119134970-119134984 chr10:119134952-119134966 chr10:119135150-119135164 chr10:119134952-119134961 chr10:119135294-119135305 chr10:119134812-119134834 chr10:119134955-119134969 chr10:119135151-119135165 chr10:119134959-119134970
26	YY1	chr10:119134334-119134939	A549	lung:	n/a	chr10:119134812-119134822 chr10:119134812-119134834
27	YY1	chr10:119134435-119135630	H1-hESC	embryonic stem cell:	n/a	chr10:119134812-119134822 chr10:119134970-119134984 chr10:119134952-119134966 chr10:119135150-119135164 chr10:119134952-119134961 chr10:119135294-119135305 chr10:119134812-119134834 chr10:119134955-119134969 chr10:119135151-119135165 chr10:119134959-119134970
28	MAX	chr10:119134340-119136309	K562	blood:	n/a	chr10:119136126-119136135 chr10:119135166-119135177 chr10:119136127-119136134 chr10:119135167-119135176 chr10:119135166-119135176 chr10:119135167-119135176 chr10:119135166-119135177 chr10:119135167-119135176 chr10:119135167-119135177 chr10:119135126-119135135 chr10:119136125-119136135
29	POLR2A	chr10:119133388-119135911	Hela-S3	cervix:	n/a	n/a
30	POLR2A	chr10:119133765-119135682	MCF-7	breast:	n/a	n/a
31	POLR2A	chr10:119134084-119135832	GM15510	blood:	n/a	n/a
32	POLR2A	chr10:119133232-119136126	HL-60	blood:	n/a	n/a
33	POLR2A	chr10:119133450-119136300	Hela-S3	cervix:	n/a	n/a
34	CHD1	chr10:119133142-119136229	IMR90	lung:	n/a	chr10:119134845-119134855
35	ZBTB7A	chr10:119134293-119134707	K562	blood:	n/a	n/a
36	ZNF143	chr10:119134014-119135504	GM12878	blood:	n/a	n/a
37	ZNF263	chr10:119133447-119136255	HEK293-T-REx	kidney:	n/a	chr10:119135567-119135576 chr10:119135640-119135649
38	MAX	chr10:119133309-119136240	Hela-S3	cervix:	n/a	chr10:119136126-119136135 chr10:119135166-119135177 chr10:119136127-119136134 chr10:119135167-119135176 chr10:119135166-119135176 chr10:119135167-119135176 chr10:119135166-119135177 chr10:119135167-119135176 chr10:119135167-119135177 chr10:119135126-119135135 chr10:119136125-119136135
39	YY1	chr10:119134455-119135674	GM12892	blood:	n/a	chr10:119134812-119134822 chr10:119134970-119134984 chr10:119134952-119134966 chr10:119135150-119135164 chr10:119134952-119134961 chr10:119135294-119135305 chr10:119134812-119134834 chr10:119134955-119134969 chr10:119135151-119135165 chr10:119134959-119134970
40	REST	chr10:119133522-119136151	H1-neurons	neurons:	n/a	chr10:119133736-119133745 chr10:119134962-119134975 chr10:119135426-119135440 chr10:119133734-119133747 chr10:119133731-119133751 chr10:119133731-119133740
41	MXI1	chr10:119133417-119135996	Hela-S3	cervix:	n/a	chr10:119135168-119135177 chr10:119135168-119135177 chr10:119135166-119135175
42	POLR2A	chr10:119134248-119135652	IMR90	lung:	n/a	n/a
43	POLR2A	chr10:119133363-119136244	PBDE	blood:	n/a	n/a
44	POLR2A	chr10:119133633-119136237	Raji	blood:	n/a	n/a
45	POLR2A	chr10:119134328-119135680	GM12892	blood:	n/a	n/a
46	POLR2A	chr10:119134242-119135514	H1-hESC	embryonic stem cell:	n/a	n/a
47	YY1	chr10:119134349-119135661	GM12878	blood:	n/a	chr10:119134812-119134822 chr10:119134970-119134984 chr10:119134952-119134966 chr10:119135150-119135164 chr10:119134952-119134961 chr10:119135294-119135305 chr10:119134812-119134834 chr10:119134955-119134969 chr10:119135151-119135165 chr10:119134959-119134970
48	ZBTB7A	chr10:119134025-119134732	ECC-1	luminal epithelium:	n/a	n/a
49	YY1	chr10:119134366-119135637	HepG2	liver:	n/a	chr10:119134812-119134822 chr10:119134970-119134984 chr10:119134952-119134966 chr10:119135150-119135164 chr10:119134952-119134961 chr10:119135294-119135305 chr10:119134812-119134834 chr10:119134955-119134969 chr10:119135151-119135165 chr10:119134959-119134970
50	ZBTB7A	chr10:119134246-119134633	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:119134433..119135282-chr17:40831520..40832356,2	Hela-S3	cervix:
2	chr10:119134433..119135335-chr19:39897473..39898103,2	Hela-S3	cervix:

Variant related genes	Relation type
PDZD8	TF binding region
ENSG00000128016	Chromatin interaction
ENSG00000267042	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3405759	chr10:119133487-119136335	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	esv3448575	chr10:119133637-119136185	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119130200-119135600	Active TSS	Fetal Intestine Large	intestine
2	chr10:119131200-119135600	Active TSS	K562	blood
3	chr10:119131400-119135400	Active TSS	Pancreas	Pancrea
4	chr10:119131400-119135800	Active TSS	Fetal Intestine Small	intestine
5	chr10:119131400-119135800	Active TSS	NHLF	lung
6	chr10:119131600-119135400	Active TSS	Liver	Liver
7	chr10:119131600-119135400	Active TSS	HMEC	breast
8	chr10:119131600-119135600	Active TSS	GM12878-XiMat	blood
9	chr10:119131600-119135800	Active TSS	Ovary	ovary
10	chr10:119131600-119135800	Active TSS	Right Atrium	heart
11	chr10:119131800-119135400	Active TSS	Rectal Mucosa Donor 29	rectum
12	chr10:119131800-119135600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:119131800-119135800	Active TSS	Fetal Kidney	kidney
14	chr10:119131800-119135800	Active TSS	NHDF-Ad	bronchial
15	chr10:119132000-119134600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:119132000-119135600	Active TSS	Right Ventricle	heart
17	chr10:119132000-119135800	Active TSS	A549	lung
18	chr10:119132200-119135600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
19	chr10:119132200-119135600	Active TSS	HSMM	muscle
20	chr10:119132200-119135600	Active TSS	HSMMtube	muscle
21	chr10:119132200-119135800	Active TSS	Stomach Mucosa	stomach
22	chr10:119132200-119136200	Active TSS	Aorta	Aorta
23	chr10:119132400-119135600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
24	chr10:119132400-119135600	Active TSS	HUES48 Cell Line	embryonic stem cell
25	chr10:119132400-119135600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr10:119132400-119135600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr10:119132400-119135600	Active TSS	Brain Anterior Caudate	brain
28	chr10:119132400-119135600	Active TSS	Sigmoid Colon	Sigmoid Colon
29	chr10:119132400-119135800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr10:119132400-119136000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr10:119132400-119136000	Active TSS	Pancreatic Islets	Pancreatic Islet
32	chr10:119132400-119136000	Active TSS	Psoas Muscle	Psoas
33	chr10:119132600-119134600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
34	chr10:119132600-119134800	Flanking Active TSS	Primary B cells from cord blood	blood
35	chr10:119132600-119135400	Active TSS	Hela-S3	cervix
36	chr10:119132600-119135600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr10:119132600-119135600	Active TSS	Breast Myoepithelial Primary Cells	Breast
38	chr10:119132600-119135600	Active TSS	Brain Inferior Temporal Lobe	brain
39	chr10:119132600-119135600	Active TSS	Rectal Mucosa Donor 31	rectum
40	chr10:119132600-119135800	Active TSS	Rectal Smooth Muscle	rectum
41	chr10:119132800-119135400	Active TSS	Esophagus	oesophagus
42	chr10:119132800-119135600	Active TSS	Primary T helper naive cells from peripheral blood	blood
43	chr10:119132800-119135600	Active TSS	Muscle Satellite Cultured Cells	--
44	chr10:119132800-119135600	Active TSS	Gastric	stomach
45	chr10:119132800-119135600	Active TSS	Lung	lung
46	chr10:119132800-119135600	Active TSS	NH-A	brain
47	chr10:119132800-119135600	Active TSS	NHEK	skin
48	chr10:119132800-119135600	Active TSS	Osteobl	bone
49	chr10:119132800-119135800	Active TSS	Colon Smooth Muscle	Colon
50	chr10:119132800-119136000	Active TSS	Duodenum Smooth Muscle	Duodenum

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