Variant report

Variant	rs576406415
Chromosome Location	chr14:35466855-35466856
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:35465599..35469103-chr14:35471087..35474391,3	MCF-7	breast:
2	chr14:35466324..35467917-chr14:35470934..35473111,2	K562	blood:
3	chr14:35456800..35459337-chr14:35464974..35467131,2	K562	blood:
4	chr14:35451620..35453361-chr14:35464939..35467575,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100883	Chromatin interaction
ENSG00000258704	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045939	chr14:35311074-35494703	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
2	nsv456203	chr14:35311272-35512335	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
3	nsv564200	chr14:35311272-35512335	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
4	nsv901602	chr14:35367889-35571651	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
5	nsv949617	chr14:35379923-35825436	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
6	nsv901604	chr14:35381137-35485748	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
7	nsv1043470	chr14:35398522-35754029	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
8	nsv542031	chr14:35398522-35754029	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
9	nsv1035925	chr14:35404661-35483420	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
10	nsv901605	chr14:35409214-35512335	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
11	nsv901606	chr14:35449467-35512335	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
12	nsv901607	chr14:35449467-35540764	Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
13	nsv901608	chr14:35449467-35571651	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
14	nsv901609	chr14:35449467-35587767	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
15	nsv456204	chr14:35466584-35556498	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
16	nsv564263	chr14:35466584-35556498	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35452800-35478200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:35453200-35467200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr14:35453200-35474200	Weak transcription	Aorta	Aorta
4	chr14:35453400-35467400	Weak transcription	Placenta	Placenta
5	chr14:35453600-35467600	Weak transcription	Fetal Intestine Small	intestine
6	chr14:35453600-35468800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr14:35453600-35470600	Weak transcription	Fetal Stomach	stomach
8	chr14:35453600-35474200	Weak transcription	Right Ventricle	heart
9	chr14:35453600-35485600	Weak transcription	HSMMtube	muscle
10	chr14:35453800-35467200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr14:35453800-35467200	Weak transcription	Primary hematopoietic stem cells	blood
12	chr14:35453800-35467200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr14:35453800-35468600	Weak transcription	Colonic Mucosa	Colon
14	chr14:35453800-35472000	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr14:35453800-35473600	Weak transcription	Fetal Lung	lung
16	chr14:35453800-35474000	Weak transcription	NHEK	skin
17	chr14:35453800-35476000	Weak transcription	Rectal Smooth Muscle	rectum
18	chr14:35453800-35499200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr14:35454000-35479200	Weak transcription	Gastric	stomach
20	chr14:35454400-35468800	Weak transcription	Left Ventricle	heart
21	chr14:35454400-35471200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr14:35454400-35481600	Weak transcription	HMEC	breast
23	chr14:35454400-35485200	Weak transcription	Esophagus	oesophagus
24	chr14:35454400-35509800	Weak transcription	Psoas Muscle	Psoas
25	chr14:35454600-35468800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr14:35454600-35474000	Weak transcription	Brain Angular Gyrus	brain
27	chr14:35454800-35467000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr14:35454800-35468400	Weak transcription	Fetal Muscle Leg	muscle
29	chr14:35454800-35468600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr14:35454800-35468800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr14:35454800-35469200	Weak transcription	Brain Substantia Nigra	brain
32	chr14:35454800-35471600	Weak transcription	Ovary	ovary
33	chr14:35454800-35471800	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr14:35454800-35472000	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr14:35454800-35474000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr14:35454800-35481600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr14:35454800-35483600	Weak transcription	Small Intestine	intestine
38	chr14:35454800-35484800	Weak transcription	Fetal Brain Male	brain
39	chr14:35455000-35468800	Weak transcription	Fetal Heart	heart
40	chr14:35455000-35470600	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr14:35455200-35467000	Weak transcription	Primary T cells from cord blood	blood
42	chr14:35455200-35467000	Weak transcription	Duodenum Mucosa	Duodenum
43	chr14:35455200-35467200	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr14:35455200-35468800	Weak transcription	HSMM	muscle
45	chr14:35455200-35470600	Weak transcription	NH-A	brain
46	chr14:35455200-35477200	Weak transcription	Colon Smooth Muscle	Colon
47	chr14:35455200-35482800	Weak transcription	A549	lung
48	chr14:35455200-35487200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr14:35455400-35468800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr14:35455400-35468800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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