Variant report

Variant	rs576451440
Chromosome Location	chr7:101647117-101647118
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:20)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr20:52811638..52812333-chr7:101647101..101648001,2	MCF-7	breast:
2	chr7:101611685..101612677-chr7:101647099..101648113,5	MCF-7	breast:
3	chr7:101341451..101343777-chr7:101646171..101649307,3	MCF-7	breast:
4	chr7:101587951..101588938-chr7:101647056..101648122,7	MCF-7	breast:
5	chr7:101634892..101635843-chr7:101647115..101648070,5	MCF-7	breast:
6	chr7:101645872..101649176-chr7:101651087..101654410,4	MCF-7	breast:
7	chr7:101582848..101590446-chr7:101646237..101653992,20	MCF-7	breast:
8	chr7:101615765..101617035-chr7:101647115..101648119,24	MCF-7	breast:
9	chr7:101615283..101617064-chr7:101647055..101648124,43	MCF-7	breast:
10	chr7:101586382..101587949-chr7:101645381..101648210,2	MCF-7	breast:
11	chr7:101643865..101645968-chr7:101646120..101648774,2	K562	blood:
12	chr7:101554223..101556621-chr7:101646115..101648996,2	MCF-7	breast:
13	chr7:101583066..101585594-chr7:101646947..101648936,2	MCF-7	breast:
14	chr7:101457163..101465176-chr7:101645974..101654631,24	MCF-7	breast:
15	chr7:101635581..101637536-chr7:101644954..101647593,3	MCF-7	breast:
16	chr7:101615283..101617064-chr7:101647091..101648139,67	MCF-7	breast:
17	chr7:101332096..101334015-chr7:101646286..101648242,2	MCF-7	breast:
18	chr7:101610580..101623329-chr7:101643563..101654055,32	MCF-7	breast:
19	chr7:101628172..101630666-chr7:101646616..101649464,3	MCF-7	breast:
20	chr7:101602326..101606469-chr7:101646129..101649808,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000257923	Chromatin interaction
ENSG00000272219	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024319	chr7:101368299-101668159	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv539047	chr7:101368299-101668159	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv1020372	chr7:101420819-101718950	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv482846	chr7:101539981-101707666	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv888827	chr7:101562674-101650302	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv482521	chr7:101604002-101718950	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv831080	chr7:101629121-101718950	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv981839	chr7:101632578-101663728	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv966867	chr7:101645987-101658423	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101578200-101671200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr7:101627000-101647400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr7:101627000-101671200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr7:101628000-101651600	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr7:101629000-101651600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr7:101630000-101668000	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr7:101630800-101652400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr7:101633200-101649000	Weak transcription	Lung	lung
9	chr7:101633400-101651400	Weak transcription	Gastric	stomach
10	chr7:101634400-101649800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr7:101634400-101651600	Weak transcription	Duodenum Mucosa	Duodenum
12	chr7:101634600-101652000	Weak transcription	Primary T cells from cord blood	blood
13	chr7:101635000-101652000	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr7:101635800-101651400	Weak transcription	HepG2	liver
15	chr7:101637600-101647400	Weak transcription	Fetal Stomach	stomach
16	chr7:101639800-101655800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr7:101640200-101651600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr7:101640200-101652000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr7:101641600-101672000	Weak transcription	K562	blood
20	chr7:101641800-101651800	Weak transcription	Fetal Intestine Large	intestine
21	chr7:101642000-101661600	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr7:101642200-101647600	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr7:101642200-101666600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr7:101642200-101671400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr7:101642200-101671600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr7:101642200-101674600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr7:101642400-101647200	Weak transcription	A549	lung
28	chr7:101642400-101647800	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr7:101642400-101648000	Weak transcription	Rectal Smooth Muscle	rectum
30	chr7:101642400-101650000	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr7:101642400-101652200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr7:101642400-101661800	Weak transcription	Spleen	Spleen
33	chr7:101642400-101668000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr7:101642400-101671200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr7:101642400-101671400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr7:101642400-101675400	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr7:101642600-101647400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr7:101642800-101651600	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr7:101642800-101668000	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr7:101642800-101697600	Weak transcription	Primary B cells from cord blood	blood
41	chr7:101643000-101648200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr7:101643000-101655600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr7:101643000-101657400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr7:101643000-101665200	Weak transcription	Primary B cells from peripheral blood	blood
45	chr7:101643000-101672800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr7:101643000-101675600	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr7:101643200-101651400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr7:101643200-101652400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr7:101643200-101666400	Weak transcription	Primary hematopoietic stem cells	blood
50	chr7:101643400-101648800	Weak transcription	H1 Cell Line	embryonic stem cell

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