Variant report

Variant	rs57655345
Chromosome Location	chr1:211108933-211108934
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs11119654	0.91[ASN][1000 genomes]
rs11806852	0.83[ASN][1000 genomes]
rs12021704	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12022715	0.91[ASN][1000 genomes]
rs12022739	0.91[ASN][1000 genomes]
rs12025525	0.83[ASN][1000 genomes]
rs12026311	0.83[ASN][1000 genomes]
rs12026374	0.83[ASN][1000 genomes]
rs12027535	0.84[ASN][1000 genomes]
rs12028941	0.91[ASN][1000 genomes]
rs12030715	0.83[ASN][1000 genomes]
rs12030905	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12036999	0.99[ASN][1000 genomes]
rs12039302	0.94[ASN][1000 genomes]
rs12043937	0.91[ASN][1000 genomes]
rs12043952	0.89[ASN][1000 genomes]
rs12046391	0.91[ASN][1000 genomes]
rs12070402	0.91[ASN][1000 genomes]
rs12406562	0.92[ASN][1000 genomes]
rs12407609	0.81[ASN][1000 genomes]
rs1501544	0.93[ASN][1000 genomes]
rs1501545	0.93[ASN][1000 genomes]
rs1501548	0.91[ASN][1000 genomes]
rs1501549	0.90[ASN][1000 genomes]
rs1501550	0.91[ASN][1000 genomes]
rs1532682	0.91[ASN][1000 genomes]
rs2358210	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4570464	0.81[ASN][1000 genomes]
rs4575146	0.81[ASN][1000 genomes]
rs56999636	0.93[ASN][1000 genomes]
rs57179129	0.83[ASN][1000 genomes]
rs61848562	0.83[ASN][1000 genomes]
rs61848992	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61849000	0.98[ASN][1000 genomes]
rs61849015	0.94[ASN][1000 genomes]
rs61849024	0.93[ASN][1000 genomes]
rs61850228	0.84[ASN][1000 genomes]
rs6540636	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6540638	0.91[ASN][1000 genomes]
rs6659020	0.80[ASN][1000 genomes]
rs6659135	0.91[ASN][1000 genomes]
rs6663672	0.80[ASN][1000 genomes]
rs6666287	0.94[ASN][1000 genomes]
rs6675213	0.96[ASN][1000 genomes]
rs6678568	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6680997	0.91[ASN][1000 genomes]
rs6689715	0.91[ASN][1000 genomes]
rs7514606	0.83[ASN][1000 genomes]
rs7515316	0.86[ASN][1000 genomes]
rs7518841	0.91[ASN][1000 genomes]
rs7522894	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7523929	0.89[ASN][1000 genomes]
rs7537597	0.81[ASN][1000 genomes]
rs7551412	0.91[ASN][1000 genomes]
rs7553997	0.94[ASN][1000 genomes]
rs7554723	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873154	chr1:211057697-211117197	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211093400-211110800	Weak transcription	HSMM	muscle
2	chr1:211108600-211117400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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