Variant report

Variant	rs57657697
Chromosome Location	chr13:51873207-51873208
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51867466..51870249-chr13:51871645..51874194,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs57677735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58150028	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs59877637	0.83[ASN][1000 genomes]
rs73492210	0.85[ASN][1000 genomes]
rs73492211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73492213	0.85[ASN][1000 genomes]
rs73492219	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs73492222	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832611	chr13:51766472-51938314	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51853000-51889600	Weak transcription	Brain Angular Gyrus	brain
2	chr13:51855600-51875400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr13:51867600-51910800	Weak transcription	Pancreas	Pancrea
4	chr13:51871800-51875800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr13:51871800-51877400	Weak transcription	Fetal Brain Female	brain
6	chr13:51872000-51873400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr13:51872000-51875000	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr13:51872000-51875400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr13:51872200-51876200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr13:51872400-51876800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr13:51872400-51876800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr13:51872800-51873400	Enhancers	Fetal Stomach	stomach
13	chr13:51872800-51873600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr13:51872800-51873800	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr13:51873000-51873600	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr13:51873000-51874000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr13:51873000-51875600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr13:51873000-51875600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr13:51873000-51876600	Weak transcription	Brain Germinal Matrix	brain
20	chr13:51873200-51873600	Enhancers	Stomach Smooth Muscle	stomach
21	chr13:51873200-51875200	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr13:51873200-51877000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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