Variant report

Variant	rs57664189
Chromosome Location	chr5:178131350-178131351
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10064288	1.00[AMR][1000 genomes]
rs55761260	1.00[AMR][1000 genomes]
rs58688767	1.00[AMR][1000 genomes]
rs59187120	1.00[AMR][1000 genomes]
rs60234011	1.00[AMR][1000 genomes]
rs60420956	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61676284	1.00[AMR][1000 genomes]
rs73330651	1.00[AMR][1000 genomes]
rs73804321	1.00[AMR][1000 genomes]
rs73804464	1.00[AMR][1000 genomes]
rs73804465	1.00[AMR][1000 genomes]
rs73804466	1.00[AMR][1000 genomes]
rs73804467	1.00[AMR][1000 genomes]
rs73804481	1.00[AMR][1000 genomes]
rs73804489	1.00[AMR][1000 genomes]
rs7713372	1.00[AMR][1000 genomes]
rs7730430	1.00[AMR][1000 genomes]
rs7736895	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948342	chr5:177384542-178168737	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	141 gene(s)	inside rSNPs	diseases
2	nsv1031666	chr5:177988601-178236068	Bivalent/Poised TSS Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv5155	chr5:178075100-178132799	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv883217	chr5:178099758-178193081	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178130000-178150600	ZNF genes & repeats	Adipose Nuclei	Adipose
2	chr5:178131200-178131800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
3	chr5:178131200-178131800	Enhancers	K562	blood
4	chr5:178131200-178132200	ZNF genes & repeats	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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